Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.7e-76 287.7 141 100.0
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.7e-65 252.7 133 91.7
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 3.8e-49 198.4 130 73.1
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 4.9e-49 198.0 142 69.7
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.9e-48 196.1 126 74.6
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 5.5e-48 194.5 130 73.1
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 5.5e-48 194.5 130 73.1
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 9.3e-48 193.7 133 69.9
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.2e-47 193.4 126 73.8
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.1e-47 192.6 126 73.8
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.1e-47 192.6 130 71.5
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.1e-47 192.6 130 72.3
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.7e-47 192.2 126 74.6
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.7e-47 192.2 129 72.1
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.5e-47 191.8 126 72.2
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 4.6e-47 191.4 133 69.2
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 4.6e-47 191.4 130 71.5
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 6.0e-47 191.0 130 71.5
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 6.0e-47 191.0 126 72.2
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 6.0e-47 191.0 130 70.8
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 7.9e-47 190.7 130 71.5
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 7.9e-47 190.7 130 70.8
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.3e-46 189.9 133 69.9
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.8e-46 189.5 130 70.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.3e-46 189.1 130 71.5
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.3e-46 189.1 130 70.8
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.0e-46 188.7 126 71.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.0e-46 188.7 130 70.8
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 3.9e-46 188.3 130 71.5
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 3.9e-46 188.3 130 70.0
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 3.9e-46 188.3 130 70.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 5.1e-46 188.0 126 71.4
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 5.1e-46 188.0 126 71.4
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 5.1e-46 188.0 130 69.2
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 5.1e-46 188.0 130 68.5
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 5.1e-46 188.0 128 70.3
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.7e-46 187.6 130 68.5
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 6.7e-46 187.6 130 69.2
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 8.7e-46 187.2 130 72.3
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 8.7e-46 187.2 126 71.4
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.1e-45 186.8 130 69.2
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.1e-45 186.8 130 71.5
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.1e-45 186.8 130 68.5
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.5e-45 186.4 126 70.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.5e-45 186.4 130 70.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.5e-45 186.4 128 70.3
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.5e-45 186.4 130 70.0
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.5e-45 186.4 130 69.2
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.5e-45 186.4 130 69.2
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.9e-45 186.0 130 70.8
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.9e-45 186.0 130 67.7
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.9e-45 186.0 126 70.6
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.9e-45 186.0 130 67.7
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.9e-45 186.0 130 69.2
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.9e-45 186.0 126 72.2
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 2.5e-45 185.7 130 70.8
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 2.5e-45 185.7 126 70.6
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-45 185.7 128 71.1
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.5e-45 185.7 130 68.5
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 2.5e-45 185.7 130 70.0
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.3e-45 185.3 126 70.6
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 3.3e-45 185.3 126 69.0
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.3e-45 185.3 126 69.0
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 3.3e-45 185.3 126 70.6
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 3.3e-45 185.3 130 70.8
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.3e-45 185.3 130 70.0
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.3e-45 184.9 126 69.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.3e-45 184.9 126 71.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 4.3e-45 184.9 130 67.7
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 4.3e-45 184.9 130 68.5
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 4.3e-45 184.9 130 70.8
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 5.6e-45 184.5 130 70.8
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 5.6e-45 184.5 130 68.5
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 5.6e-45 184.5 126 69.8
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 5.6e-45 184.5 130 68.5
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 5.6e-45 184.5 130 69.2
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 5.6e-45 184.5 130 68.5
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 7.4e-45 184.1 126 71.4
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.4e-45 184.1 126 71.4
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 9.6e-45 183.7 130 68.5
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.3e-44 183.3 130 69.2
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.3e-44 183.3 130 68.5
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.6e-44 183.0 130 70.0
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.6e-44 183.0 130 70.0
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.6e-44 183.0 130 70.0
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.6e-44 183.0 130 70.0
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.6e-44 183.0 130 70.0
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.6e-44 183.0 126 70.6
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.8e-44 182.2 130 70.0
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.8e-44 182.2 126 68.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.8e-44 182.2 130 68.5
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 2.8e-44 182.2 126 69.0
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 2.8e-44 182.2 126 69.0
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 2.8e-44 182.2 126 69.0
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 2.8e-44 182.2 126 69.0
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 3.7e-44 181.8 130 69.2
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 4.8e-44 181.4 129 67.4
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 4.8e-44 181.4 130 67.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.2e-44 181.0 126 65.9
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 6.2e-44 181.0 126 67.5
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 8.1e-44 180.6 130 68.5
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 8.1e-44 180.6 130 67.7
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.1e-43 180.3 126 68.3
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.4e-43 179.1 126 66.7
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.4e-43 179.1 126 70.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 4.0e-43 178.3 130 66.9
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 4.0e-43 178.3 130 66.9
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 4.0e-43 178.3 126 68.3
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.3e-43 177.9 126 65.9
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 5.3e-43 177.9 130 66.9
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 2.0e-42 176.0 133 66.9
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 2.0e-42 176.0 130 65.4
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 4.5e-42 174.9 126 68.3
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 7.6e-42 174.1 130 65.4
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 7.6e-42 174.1 126 65.9
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-41 173.3 163 57.1
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 6.5e-41 171.0 97 86.6
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.4e-40 169.9 127 65.4
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 4.2e-40 168.3 138 60.1
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 2.6e-34 149.1 130 56.2
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.5e-34 148.3 134 55.2
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 5.9e-34 147.9 126 54.8
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.0e-33 147.1 126 59.5
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.3e-33 146.7 126 55.6
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 2.2e-33 146.0 130 56.9
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 4.2e-32 141.7 95 69.5
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 3.9e-30 135.2 91 71.4
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.9e-30 135.2 87 73.6
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.1e-30 134.8 87 73.6
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 6.7e-30 134.4 87 73.6
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 9.7e-29 130.6 94 68.1
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-28 130.2 87 71.3
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-28 129.4 110 59.1
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.8e-28 128.3 90 68.9
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.1e-27 125.2 87 67.8
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.3e-27 124.8 87 67.8
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 4.2e-24 115.2 80 67.5
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.5e-24 114.8 126 48.4
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.7e-23 112.5 73 72.6
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 7.9e-23 110.9 93 61.3
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-21 106.3 69 71.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.3e-20 101.3 80 61.2
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.4e-19 100.1 99 53.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 6.5e-17 91.3 68 63.2
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.6e-15 86.7 89 51.7
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 3.9e-14 82.0 129 31.8
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.7e-12 76.6 57 66.7
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 8.0e-07 57.8 35 65.7


User provided reference genes

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