Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g011890.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.5e-25 117.5 59 100.0
Thhalv10011731m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 8.8e-16 86.3 55 78.2
Eucgr.I01854 Eucalyptus grandis HOM05D000729 ORTHO05D001063 2.5e-15 84.7 55 78.2
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 2.5e-15 84.7 55 78.2
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 2.5e-15 84.7 55 78.2
Solyc09g061460.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 5.7e-15 83.6 55 76.4
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BolC2t10586H Brassica oleracea HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BolSC29t60627H Brassica oleracea HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BolSC37t60784H Brassica oleracea HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
BraSC58t46449Z Brassica rapa HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
CAN.G1298.16 Capsicum annuum HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
CAN.G612.3 Capsicum annuum HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
Gohir.A03G043250 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
Potri.013G139112 Populus trichocarpa HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
RcHm_v2.0_CPg0501741 Rosa chinensis HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
RcHm_v2.0_CPg0502671 Rosa chinensis HOM05D000729 ORTHO05D001063 7.4e-15 83.2 55 76.4
RcHm_v2.0_Chr5g0051091 Rosa chinensis HOM05D000729 ORTHO05D001063 9.7e-15 82.8 55 74.5
CAN.G1738.18 Capsicum annuum HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 74.5
Nn029s41588 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 76.4
Nn031s41603 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 76.4
Nn206s45069 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 76.4
Nn219s45284 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 76.4
Nn233s45561 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 76.4
Nn269s46005 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-14 82.4 55 76.4
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 74.5
CSS0034759 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 74.5
Hund07988 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund08790 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund22780 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund27635 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund27858 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund27885 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund27951 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund28172 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund28540 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund28970 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund29048 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund29105 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund29118 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund29149 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
Hund29155 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-14 82.0 55 76.4
CsaV3_UNG208970 Cucumis sativus L. HOM05D000729 ORTHO05D001063 2.8e-14 81.3 54 75.9
Gohir.A09G045500 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.8e-14 81.3 55 74.5
HanXRQChr13g0413651 Helianthus annuus HOM05D000729 ORTHO05D001063 2.8e-14 81.3 55 74.5
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 2.8e-14 81.3 55 74.5
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 2.8e-14 81.3 55 74.5
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 2.8e-14 81.3 55 74.5
HanXRQChr00c0214g0572641 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr13g0413721 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr13g0413871 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr15g0489701 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
Sed0012918 Sechium edule HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 3.7e-14 80.9 55 74.5
Hund03965 Selenicereus undatus HOM05D000729 ORTHO05D001063 4.8e-14 80.5 55 72.7
Gohir.D01G134200 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.4e-13 79.0 55 72.7
CAN.G1167.12 Capsicum annuum HOM05D000729 ORTHO05D001063 1.8e-13 78.6 55 72.7
CAN.G1185.9 Capsicum annuum HOM05D000729 ORTHO05D001063 1.8e-13 78.6 55 70.9
Migut.F01470 Erythranthe guttata HOM05D000729 ORTHO05D001063 1.8e-13 78.6 55 72.7
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 2.4e-13 78.2 55 72.7
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 2.4e-13 78.2 55 72.7
Gohir.A10G100333 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-13 78.2 55 74.5
BolSC56t61238H Brassica oleracea HOM05D000729 ORTHO05D001063 3.1e-13 77.8 55 72.7
HanXRQChr09g0249681 Helianthus annuus HOM05D000729 ORTHO05D001063 3.1e-13 77.8 55 72.7
CAN.G398.11 Capsicum annuum HOM05D000729 ORTHO05D001063 5.3e-13 77.0 55 70.9
Nitab4.5_0000729g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.9e-13 76.6 55 70.9
CAN.G30.9 Capsicum annuum HOM05D000729 ORTHO05D001063 1.5e-12 75.5 55 70.9
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 1.3e-11 72.4 51 72.5
arahy.Tifrunner.gnm1.ann1.E8A372 Arachis hypogaea HOM05D000729 ORTHO05D001063 2.9e-11 71.2 49 75.5
Solyc06g009580.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.9e-11 71.2 49 73.5
Hund01554 Selenicereus undatus HOM05D000729 ORTHO05D001063 6.5e-11 70.1 49 75.5
arahy.Tifrunner.gnm1.ann1.M13VEQ Arachis hypogaea HOM05D000729 ORTHO05D001063 8.5e-11 69.7 53 71.7
Gohir.A05G306433 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-10 69.3 49 73.5
Solyc11g021120.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.1e-10 69.3 55 67.3
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.4e-10 68.9 49 71.4
Peaxi162Scf00014g00287 Petunia axillaris HOM05D000729 ORTHO05D001063 3.2e-10 67.8 50 70.0
arahy.Tifrunner.gnm1.ann1.B0WG4N Arachis hypogaea HOM05D000729 ORTHO05D001063 5.5e-10 67.0 49 71.4
Gohir.A05G307266 Gossypium hirsutum HOM05D000729 ORTHO05D001063 5.5e-10 67.0 49 71.4
Gohir.D01G101826 Gossypium hirsutum HOM05D000729 ORTHO05D001063 5.5e-10 67.0 49 71.4
Nitab4.5_0004920g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.5e-10 67.0 50 68.0
arahy.Tifrunner.gnm1.ann1.984MHU Arachis hypogaea HOM05D000729 ORTHO05D001063 1.2e-09 65.9 49 69.4
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 1.6e-09 65.5 49 71.4
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 2.1e-09 65.1 49 69.4
CiPaw.03G002000 Carya illinoinensis HOM05D000729 ORTHO05D001063 2.7e-09 64.7 47 72.3
Gohir.D02G152152 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.0e-08 62.8 38 81.6
Hund23965 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-08 62.4 50 66.0
Gohir.A09G093100 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-08 62.0 38 81.6
arahy.Tifrunner.gnm1.ann1.NY619X Arachis hypogaea HOM05D000729 ORTHO05D001063 2.3e-08 61.6 49 69.4
Medtr4g103280 Medicago truncatula HOM05D000729 ORTHO05D002596 5.1e-08 60.5 46 71.7
Nitab4.5_0003957g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 5.1e-08 60.5 50 64.0
BraSC143t45669Z Brassica rapa HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 78.4
Gohir.A04G039450 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 78.4
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 78.4
Gohir.D08G147600 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 75.7
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 78.4
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 78.4
Lalb_Chr07g0191631 Lupinus albus HOM05D000729 ORTHO05D001063 2.0e-07 58.5 37 78.4
Hund27921 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.6e-07 58.2 39 76.9
Nitab4.5_0004929g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.4e-07 57.4 49 65.3
CSS0018773 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 9.7e-07 56.2 35 80.0
HanXRQChr00c0780g0577311 Helianthus annuus HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
HanXRQChr16g0530791 Helianthus annuus HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
Phvul.003G089802 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
Phvul.009G090272 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
SalBow6G4786 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.7e-07 56.2 37 75.7
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 2.8e-06 54.7 35 74.3
Sc20g0001970 Simmondsia chinensis HOM05D000680 ORTHO05D000738 2.8e-06 54.7 37 73.0
HanXRQChr02g0059781 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-06 53.9 36 75.0
Lalb_Chr07g0191591 Lupinus albus HOM05D000729 ORTHO05D001063 6.3e-06 53.5 37 73.0
MD01G1004600 Malus domestica HOM05D000729 ORTHO05D001063 6.3e-06 53.5 37 73.0
Gohir.A06G098106 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.2e-06 53.1 37 75.7
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 8.2e-06 53.1 42 64.3


User provided reference genes

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