Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g011860.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.0e-61 236.9 118 100.0
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 4.9e-42 174.5 116 81.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.9e-42 174.5 116 81.0
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.9e-42 174.5 116 81.0
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.9e-42 174.5 116 81.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.9e-42 174.5 116 81.0
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.9e-42 174.5 116 81.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.9e-42 174.5 116 81.0
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.9e-42 174.5 116 81.0
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 9.2e-41 170.2 116 80.2
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 3.1e-36 155.2 116 74.1
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 6.8e-36 154.1 116 74.1
Solyc11g044680.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.6e-35 152.1 110 74.5
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.4e-35 151.4 116 73.3
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 5.8e-35 151.0 110 77.3
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.8e-34 148.3 96 81.2
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.3e-26 123.2 88 76.1
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 4.2e-25 118.2 99 69.7
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 9.3e-25 117.1 87 73.6
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 3.5e-24 115.2 82 76.8
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 3.5e-24 115.2 82 76.8
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 3.5e-24 115.2 82 76.8
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 1.9e-22 109.4 99 65.7
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 2.5e-22 109.0 92 65.2
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-19 98.2 72 76.4
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 7.6e-19 97.4 79 68.4
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 7.6e-19 97.4 79 68.4
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 1.4e-17 93.2 102 56.9
Oeu023335.1 Olea europaea HOM05D001070 ORTHO05D002096 7.1e-17 90.9 107 55.1
Oeu010690.1 Olea europaea HOM05D001070 ORTHO05D002096 1.6e-16 89.7 107 53.3
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.9e-16 87.4 71 67.6
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 2.3e-15 85.9 66 72.7
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 3.0e-15 85.5 117 50.4
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 3.0e-15 85.5 117 50.4
Oeu022558.1 Olea europaea HOM05D001070 ORTHO05D002096 8.7e-15 84.0 113 51.3
CAN.G134.9 Capsicum annuum HOM05D001070 ORTHO05D002096 3.3e-14 82.0 71 66.2
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 1.6e-13 79.7 72 65.3
TAR626G0349 Trochodendron aralioides HOM05D001070 ORTHO05D002096 8.1e-13 77.4 88 56.8
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.4e-12 75.9 105 52.4
Sc04g0003130 Simmondsia chinensis HOM05D001070 ORTHO05D002096 4.5e-11 71.6 82 58.5
TAR624G0722 Trochodendron aralioides HOM05D001070 ORTHO05D002096 4.5e-11 71.6 87 54.0
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 4.5e-11 71.6 87 54.0
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 5.8e-11 71.2 83 55.4
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 5.8e-11 71.2 61 62.3
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 9.9e-11 70.5 72 58.3
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.2e-10 69.3 62 66.1
ScUNg0000260 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.2e-10 69.3 120 45.8
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.9e-10 68.9 76 60.5
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 3.8e-10 68.6 82 50.0
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.1e-09 67.0 60 65.0
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 1.4e-09 66.6 79 54.4
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 1.4e-09 66.6 83 53.0
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 1.4e-09 66.6 83 53.0
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 1.4e-09 66.6 83 53.0
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 1.4e-09 66.6 55 69.1
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 1.4e-09 66.6 55 69.1
Oeu012767.1 Olea europaea HOM05D001070 ORTHO05D002096 4.2e-09 65.1 64 60.9
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 5.5e-09 64.7 83 51.8
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 5.5e-09 64.7 83 51.8
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 5.5e-09 64.7 83 51.8
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 5.5e-09 64.7 83 51.8
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 1.2e-08 63.5 114 45.6
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 1.2e-08 63.5 84 52.4
Peaxi162Scf00629g00021 Petunia axillaris HOM05D001032 ORTHO05D000907 1.6e-08 63.2 91 47.3
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 2.7e-08 62.4 83 50.6
Nitab4.5_0004137g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.7e-08 62.4 95 46.3
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 2.7e-08 62.4 90 48.9
Sed0020782 Sechium edule HOM05D001070 ORTHO05D002096 3.5e-08 62.0 67 59.7
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 7.9e-08 60.8 98 46.9
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 1.8e-07 59.7 108 41.7
Nitab4.5_0001152g0850 Nicotiana tabacum HOM05D011856 ORTHO05D013014 2.3e-07 59.3 36 77.8
Nitab4.5_0003632g0010 Nicotiana tabacum HOM05D008537 ORTHO05D010652 3.0e-07 58.9 34 82.4
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.9e-07 58.5 50 68.0
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.9e-07 58.5 50 68.0
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 3.9e-07 58.5 46 73.9
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 3.9e-07 58.5 82 50.0
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 3.9e-07 58.5 101 46.5
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 6.7e-07 57.8 77 50.6
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.7e-07 57.4 37 83.8
ScUNg0001540 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.1e-06 57.0 60 63.3


User provided reference genes

Program Settings