Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.2e-138 496.5 259 100.0
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 2.0e-136 489.2 259 98.1
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 9.5e-131 470.3 260 95.0
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 2.0e-117 426.0 269 84.0
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.0e-117 424.5 269 84.4
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 6.4e-111 404.4 261 82.0
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 6.2e-90 334.7 206 84.0
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 1.8e-89 333.2 206 84.5
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 2.4e-89 332.8 256 71.5
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 3.1e-89 332.4 206 83.5
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 3.1e-89 332.4 206 83.5
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 4.0e-89 332.0 239 75.7
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 5.3e-89 331.6 233 76.4
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 5.3e-89 331.6 237 75.5
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 5.3e-89 331.6 206 83.5
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.5e-88 330.1 232 76.3
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.5e-88 330.1 250 72.4
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 2.0e-88 329.7 207 83.1
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 2.6e-88 329.3 205 84.4
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 2.6e-88 329.3 206 82.5
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 3.4e-88 328.9 267 67.8
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 5.8e-88 328.2 234 74.8
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 7.6e-88 327.8 264 69.7
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 7.6e-88 327.8 193 86.5
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 9.9e-88 327.4 268 70.5
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.3e-87 327.0 250 72.0
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 1.3e-87 327.0 232 75.4
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.7e-87 326.6 213 78.9
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 2.9e-87 325.9 232 75.9
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 3.8e-87 325.5 204 82.8
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 4.9e-87 325.1 250 71.6
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 4.9e-87 325.1 245 71.8
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 6.4e-87 324.7 265 68.3
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 6.4e-87 324.7 215 79.5
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 8.4e-87 324.3 249 70.3
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 8.4e-87 324.3 248 72.6
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 1.1e-86 323.9 219 77.6
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 1.4e-86 323.6 218 79.4
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 1.4e-86 323.6 220 78.2
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 7.1e-86 321.2 266 67.7
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 7.1e-86 321.2 268 69.4
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.2e-85 320.5 244 74.6
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.6e-85 320.1 218 77.5
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 2.1e-85 319.7 237 73.4
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 2.1e-85 319.7 203 80.3
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.7e-85 319.3 263 67.7
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.7e-85 319.3 269 66.9
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 3.5e-85 318.9 235 73.6
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 7.8e-85 317.8 203 82.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 7.8e-85 317.8 213 78.4
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 7.8e-85 317.8 266 68.8
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 1.0e-84 317.4 197 81.7
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 1.0e-84 317.4 264 66.7
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.3e-84 317.0 203 82.3
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 1.3e-84 317.0 213 78.4
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.7e-84 316.6 203 82.3
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 1.7e-84 316.6 195 85.1
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 2.3e-84 316.2 195 83.6
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 3.0e-84 315.8 266 68.4
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.9e-84 315.5 200 81.0
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 5.1e-84 315.1 203 81.3
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 6.6e-84 314.7 237 72.2
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 6.6e-84 314.7 189 83.1
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 6.6e-84 314.7 187 84.0
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 6.6e-84 314.7 201 81.1
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 8.7e-84 314.3 259 68.7
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.5e-83 313.5 188 84.0
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 4.3e-83 312.0 255 68.2
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 1.3e-82 310.5 269 65.4
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.6e-82 310.1 263 65.4
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 2.1e-82 309.7 224 73.7
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 2.1e-82 309.7 203 81.3
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 2.8e-82 309.3 263 64.3
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 3.6e-82 308.9 273 64.8
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 3.6e-82 308.9 202 80.2
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 3.6e-82 308.9 273 64.1
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 4.8e-82 308.5 188 82.4
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.1e-81 307.4 271 66.1
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 1.1e-81 307.4 205 76.6
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.1e-81 307.4 220 75.9
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.8e-81 306.6 271 66.1
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 5.3e-81 305.1 273 63.7
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 6.9e-81 304.7 212 75.9
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 9.0e-81 304.3 271 65.3
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 1.2e-80 303.9 271 63.8
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 2.6e-80 302.8 271 63.5
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 4.5e-80 302.0 268 62.3
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 7.6e-80 301.2 269 62.8
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 1.7e-79 300.1 268 63.4
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 1.7e-79 300.1 268 63.4
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 2.2e-79 299.7 208 74.5
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 4.9e-79 298.5 265 62.6
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 1.4e-78 297.0 256 64.1
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 1.9e-78 296.6 198 75.3
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 7.1e-78 294.7 193 76.7
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.6e-77 293.5 200 75.0
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 2.1e-77 293.1 242 64.0
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.7e-77 292.7 271 62.4
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.4e-73 280.4 213 71.8
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 3.4e-72 275.8 260 62.3
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 4.9e-71 271.9 212 65.6
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.0e-68 264.2 207 71.5
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.3e-68 263.8 210 64.3
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.3e-68 263.1 194 66.0
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 3.1e-65 252.7 232 63.4
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.3e-63 247.3 219 59.8
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 4.1e-57 225.7 188 68.1
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 9.4e-54 214.5 201 61.7
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 3.0e-52 209.5 217 59.0
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 7.4e-51 204.9 110 91.8
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 9.7e-51 204.5 138 77.5
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.7e-50 203.8 220 50.0
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 7.2e-46 188.3 185 51.4
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 5.1e-44 182.2 148 66.9
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 6.7e-44 181.8 210 52.9
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 8.8e-44 181.4 110 77.3
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 1.9e-38 163.7 212 44.3
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 6.1e-29 132.1 136 59.6
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 5.0e-23 112.5 86 70.9
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.7e-15 87.4 74 66.2
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 5.5e-14 82.4 49 77.6
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.2e-11 74.7 109 48.6
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 9.2e-09 65.1 44 63.6
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 1.2e-08 64.7 44 75.0


User provided reference genes

Program Settings