Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 2.4e-212 741.9 369 100.0
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 1.5e-209 732.6 366 99.2
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 3.7e-189 664.8 364 93.1
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 1.9e-180 636.0 364 87.6
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 9.9e-174 613.6 361 85.9
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 1.6e-168 596.3 382 79.1
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 2.1e-160 569.3 371 74.9
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 1.8e-159 566.2 369 75.9
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 3.4e-158 562.0 370 75.4
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 3.4e-158 562.0 370 75.1
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 9.9e-158 560.5 369 75.3
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 9.9e-158 560.5 363 80.2
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.9e-157 558.9 370 75.1
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.2e-156 555.1 362 75.7
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.2e-156 555.1 362 75.7
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 7.1e-156 554.3 364 75.8
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.6e-155 553.1 359 75.2
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-155 553.1 359 75.2
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.1e-155 552.7 331 79.8
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 3.5e-155 552.0 364 73.6
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 6.0e-155 551.2 331 79.5
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 7.8e-155 550.8 375 73.3
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.0e-154 550.4 334 78.4
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.3e-154 550.1 372 74.5
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 1.3e-154 550.1 364 73.6
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.7e-154 549.7 364 73.4
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.3e-154 549.3 361 75.1
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 3.0e-154 548.9 354 74.9
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 3.9e-154 548.5 342 78.9
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 5.1e-154 548.1 367 73.0
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 5.1e-154 548.1 323 79.3
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 6.6e-154 547.7 361 74.8
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 8.7e-154 547.4 329 79.3
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.9e-153 546.2 363 74.4
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.9e-153 546.2 381 72.2
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 5.6e-153 544.7 303 84.2
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 5.6e-153 544.7 369 74.8
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 7.3e-153 544.3 376 72.6
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 2.1e-152 542.7 328 79.9
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 3.6e-152 542.0 367 73.8
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 4.8e-152 541.6 370 72.4
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 4.8e-152 541.6 368 72.3
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 6.2e-152 541.2 330 78.5
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 3.1e-151 538.9 324 78.1
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 3.1e-151 538.9 365 72.9
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 3.1e-151 538.9 367 73.0
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 5.3e-151 538.1 297 85.2
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 9.0e-151 537.3 372 71.5
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 1.2e-150 537.0 371 73.0
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 3.4e-150 535.4 342 76.9
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 4.5e-150 535.0 348 75.0
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 9.9e-150 533.9 369 70.7
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 2.2e-149 532.7 324 78.1
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 3.8e-149 531.9 381 70.3
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 3.8e-149 531.9 326 77.3
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 4.2e-148 528.5 338 74.3
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 5.4e-148 528.1 324 77.2
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 9.3e-148 527.3 356 72.2
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 1.2e-147 526.9 352 71.9
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 2.1e-147 526.2 320 78.1
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 2.7e-147 525.8 335 74.3
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 7.9e-147 524.2 335 74.0
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 7.9e-147 524.2 340 73.8
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 1.3e-146 523.5 374 69.5
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.8e-146 523.1 362 69.6
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.3e-146 522.7 380 69.2
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.3e-146 522.7 380 69.2
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 3.9e-146 521.9 371 70.1
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.9e-145 519.6 443 61.2
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 3.3e-145 518.8 304 79.3
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 1.3e-144 516.9 333 73.3
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.3e-144 516.9 371 69.3
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.1e-143 513.8 334 73.7
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 1.2e-142 510.4 427 63.0
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 7.6e-142 507.7 304 76.0
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 3.8e-141 505.4 345 70.1
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 6.4e-141 504.6 331 71.6
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 1.6e-139 500.0 347 70.6
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.1e-137 493.8 477 56.6
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 1.6e-136 490.0 382 66.8
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 3.7e-136 488.8 305 75.4
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.8e-135 486.5 346 69.7
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 3.1e-135 485.7 290 78.3
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 1.5e-134 483.4 331 71.0
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 2.0e-134 483.0 303 74.9
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 4.5e-134 481.9 303 75.2
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 8.4e-133 477.6 384 63.0
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 5.5e-132 474.9 402 60.4
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 7.9e-131 471.1 304 71.4
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.0e-130 469.2 314 71.3
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.9e-130 468.8 363 64.2
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 2.4e-127 459.5 296 73.3
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 5.3e-127 458.4 296 73.0
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 9.4e-124 447.6 368 60.6
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.6e-123 445.7 363 61.2
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 1.5e-118 430.3 297 70.4
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 4.1e-111 405.6 359 60.7
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 6.7e-106 388.3 228 79.4
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 2.0e-105 386.7 312 64.7
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.1e-103 380.9 324 55.9
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.8e-103 380.2 312 57.4
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.2e-102 377.5 293 59.7
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 4.7e-99 365.5 213 79.3
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 4.7e-99 365.5 213 79.3
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 1.0e-98 364.4 213 78.9
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 3.7e-96 355.9 234 69.2
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 1.4e-95 354.0 322 52.8
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 1.2e-91 340.9 213 75.6
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.0e-86 323.6 231 68.4
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.3e-85 320.9 292 59.2
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 5.7e-81 305.4 290 48.6
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 8.0e-75 285.0 304 45.1
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 8.9e-74 281.6 287 46.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 5.8e-73 278.9 230 61.7
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.3e-72 277.7 177 74.0
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 2.3e-69 266.9 276 46.4
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 7.3e-68 261.9 157 80.3
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 2.8e-59 233.4 135 83.0
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 5.8e-41 172.6 161 50.9
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 3.2e-39 166.8 108 66.7
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 6.0e-38 162.5 110 71.8
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 2.4e-34 150.6 108 66.7
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 1.4e-31 141.4 97 64.9
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.2e-30 138.3 118 58.5
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.7e-24 117.9 87 62.1
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 1.1e-20 105.1 64 71.9
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 2.2e-16 90.9 47 85.1
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 2.2e-16 90.9 47 85.1
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 8.5e-08 62.4 41 70.7
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.2e-06 58.5 48 58.3


User provided reference genes

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