Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g150147.1 Solanum lycopersicum HOM05D001994 ORTHO05D001954 3.8e-73 278.1 144 100.0
Solyc01g091020.3 Solanum lycopersicum HOM05D001994 ORTHO05D001954 1.7e-28 129.8 111 68.5
Sopen01g036750 Solanum pennellii HOM05D001994 ORTHO05D001954 1.7e-28 129.8 111 68.5
PGSC0003DMG400025968 Solanum tuberosum HOM05D001994 ORTHO05D001954 2.9e-28 129.0 111 67.6
CAN.G1469.3 Capsicum annuum HOM05D001994 ORTHO05D001954 2.7e-26 122.5 111 64.9
Peaxi162Scf00013g02411 Petunia axillaris HOM05D001994 ORTHO05D001954 4.6e-26 121.7 111 64.9
Cc00_g13820 Coffea canephora HOM05D001994 ORTHO05D001954 7.8e-26 120.9 111 63.1
Oeu055511.1 Olea europaea HOM05D001994 ORTHO05D001954 1.0e-25 120.6 111 62.2
Cpa.g.sc145.5 Carica papaya HOM05D001994 ORTHO05D001954 1.3e-25 120.2 111 63.1
Gohir.A07G146500 Gossypium hirsutum HOM05D001994 ORTHO05D001954 1.7e-25 119.8 111 62.2
Gohir.D07G152600 Gossypium hirsutum HOM05D001994 ORTHO05D001954 1.7e-25 119.8 111 62.2
Gorai.001G174700 Gossypium raimondii HOM05D001994 ORTHO05D001954 1.7e-25 119.8 111 62.2
Haze_02658 Corylus avellana HOM05D001994 ORTHO05D001954 2.3e-25 119.4 113 61.1
CANSAT56G3632 Cannabis sativa HOM05D001994 ORTHO05D001954 3.0e-25 119.0 111 62.2
Prupe.2G140500 Prunus persica HOM05D001994 ORTHO05D001954 3.0e-25 119.0 111 62.2
RcHm_v2.0_Chr1g0349411 Rosa chinensis HOM05D001994 ORTHO05D001954 3.0e-25 119.0 111 62.2
TAR375G0883 Trochodendron aralioides HOM05D001994 ORTHO05D001954 3.0e-25 119.0 111 60.4
Hund17039 Selenicereus undatus HOM05D001994 ORTHO05D001954 3.9e-25 118.6 111 62.2
CSS0003818 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 5.1e-25 118.2 112 60.7
CSS0036564 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 5.1e-25 118.2 112 60.7
unitig_8.g3386 Utricularia gibba HOM05D001994 ORTHO05D001954 6.6e-25 117.9 111 61.3
Dinv43683 Davidia involucrata HOM05D001994 ORTHO05D001954 8.7e-25 117.5 121 60.3
Lsat_1_v5_gn_4_42700 Lactuca sativa HOM05D001994 ORTHO05D001954 8.7e-25 117.5 111 62.2
TAR636G0026 Trochodendron aralioides HOM05D001994 ORTHO05D001954 8.7e-25 117.5 111 61.3
Ciclev10021976m.g Citrus clementina HOM05D001994 ORTHO05D001954 1.1e-24 117.1 111 61.3
Glyma.01G137300 Glycine max HOM05D001994 ORTHO05D001954 1.1e-24 117.1 111 61.3
Lj3g0015727 Lotus japonicus HOM05D001994 ORTHO05D001954 1.1e-24 117.1 111 61.3
CSS0025456 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 1.5e-24 116.7 121 57.0
FAN03G0044 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.5e-24 116.7 112 60.7
Manes.01G268000 Manihot esculenta HOM05D001994 ORTHO05D001954 1.5e-24 116.7 111 61.3
Medtr4g025850 Medicago truncatula HOM05D001994 ORTHO05D001954 1.5e-24 116.7 111 61.3
Nitab4.5_0000859g0340 Nicotiana tabacum HOM05D001994 ORTHO05D001954 1.5e-24 116.7 110 62.7
Thecc.01G380100 Theobroma cacao HOM05D001994 ORTHO05D001954 1.5e-24 116.7 111 61.3
Cfa011190 Carpinus fangiana HOM05D001994 ORTHO05D001954 1.9e-24 116.3 111 61.3
Migut.N01620 Erythranthe guttata HOM05D001994 ORTHO05D001954 1.9e-24 116.3 111 60.4
FvH4_7g11270 Fragaria vesca HOM05D001994 ORTHO05D001954 2.5e-24 115.9 111 61.3
FAN06G0063 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.5e-24 115.9 111 61.3
FAN06G0075 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.5e-24 115.9 111 61.3
FAN10G0180 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.5e-24 115.9 111 61.3
FAN10G3662 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.5e-24 115.9 111 61.3
QL04p039480 Quercus lobata HOM05D001994 ORTHO05D001954 2.5e-24 115.9 110 60.9
MSTRG.17169 Avicennia marina HOM05D001994 ORTHO05D001954 3.3e-24 115.5 122 57.4
Nn6g34048 Nelumbo nucifera HOM05D001994 ORTHO05D001954 3.3e-24 115.5 111 59.5
Duzib133G0275 Durio zibethinus HOM05D001994 ORTHO05D001954 4.3e-24 115.2 111 60.4
MD07G1117300 Malus domestica HOM05D001994 ORTHO05D001954 4.3e-24 115.2 110 60.9
Psat0s2427g0040 Pisum sativum HOM05D001994 ORTHO05D001954 4.3e-24 115.2 111 60.4
TPR.G4984 Trifolium pratense HOM05D001994 ORTHO05D001954 4.3e-24 115.2 112 59.8
GSVIVG01027649001 Vitis vinifera HOM05D001994 ORTHO05D001954 4.3e-24 115.2 110 61.8
Glyma.03G029700 Glycine max HOM05D001994 ORTHO05D001954 5.6e-24 114.8 111 59.5
Phvul.010G079401 Phaseolus vulgaris HOM05D001994 ORTHO05D001954 5.6e-24 114.8 111 59.5
SGA_v2.0_scaffold43G16503 Striga asiatica HOM05D001994 ORTHO05D001954 5.6e-24 114.8 111 58.6
arahy.Tifrunner.gnm1.ann1.52K6P9 Arachis hypogaea HOM05D001994 ORTHO05D001954 7.3e-24 114.4 111 60.4
arahy.Tifrunner.gnm1.ann1.N274YR Arachis hypogaea HOM05D001994 ORTHO05D001954 7.3e-24 114.4 111 60.4
Lj7A533G25 Lonicera japonica HOM05D001994 ORTHO05D001954 7.3e-24 114.4 111 60.4
VMungo0331G1813 Vigna mungo HOM05D001994 ORTHO05D001954 7.3e-24 114.4 110 60.0
Potri.014G066800 Populus trichocarpa HOM05D001994 ORTHO05D001954 9.6e-24 114.0 111 59.5
PGR004G0699 Punica granatum HOM05D001994 ORTHO05D001954 9.6e-24 114.0 110 60.9
Rhsim07G0030200 Rhododendron simsii HOM05D001994 ORTHO05D001954 9.6e-24 114.0 110 60.0
Sabra14G0046900 Salix brachista HOM05D001994 ORTHO05D001954 9.6e-24 114.0 111 59.5
AL4G44320 Arabidopsis lyrata HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
AT2G45200 Arabidopsis thaliana HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
Carub.0004s2782 Capsella rubella HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
Duzib138G1575 Durio zibethinus HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
Duzib268G0263 Durio zibethinus HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
Duzib268G0340 Durio zibethinus HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
Thhalv10001610m.g Eutrema salsugineum HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 59.5
Gorai.007G089800 Gossypium raimondii HOM05D001994 ORTHO05D001954 1.2e-23 113.6 111 58.6
TAR629G2471 Trochodendron aralioides HOM05D001994 ORTHO05D001954 1.6e-23 113.2 111 58.6
EL10Ac1g00848 Beta vulgaris HOM05D001994 ORTHO05D001954 2.1e-23 112.8 111 59.5
CiPaw.13G033900 Carya illinoinensis HOM05D001994 ORTHO05D001954 2.8e-23 112.5 109 59.6
TWI59G0055 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 2.8e-23 112.5 109 60.6
Eucgr.D02473 Eucalyptus grandis HOM05D001994 ORTHO05D001954 3.6e-23 112.1 111 58.6
MD02G1205800 Malus domestica HOM05D001994 ORTHO05D001954 3.6e-23 112.1 109 59.6
TPR.G39081 Trifolium pratense HOM05D001994 ORTHO05D001954 3.6e-23 112.1 111 58.6
BcaB01g03282 Brassica carinata HOM05D001994 ORTHO05D001954 4.7e-23 111.7 111 58.6
CiPaw.14G026700 Carya illinoinensis HOM05D001994 ORTHO05D001954 4.7e-23 111.7 111 58.6
THA.LOC104817228 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 4.7e-23 111.7 111 58.6
BcaC01g05150 Brassica carinata HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
A03p25100 Brassica napus HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
C03p29940 Brassica napus HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
BolC3t15341H Brassica oleracea HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
BraA03t11712Z Brassica rapa HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
ECA234G2411 Erigeron canadensis HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 57.7
Potri.002G145200 Populus trichocarpa HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
THA.LOC104802459 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 58.6
HPP92_008916 Vanilla planifolia HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 56.8
HPP92_028204 Vanilla planifolia HOM05D001994 ORTHO05D001954 6.2e-23 111.3 111 56.8
Ca_02142_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 8.1e-23 110.9 111 57.7
FAN01G2352 Fragaria x ananassa HOM05D001994 ORTHO05D001954 8.1e-23 110.9 111 60.4
HanXRQChr09g0245661 Helianthus annuus HOM05D001994 ORTHO05D001954 8.1e-23 110.9 109 59.6
HanXRQChr16g0520051 Helianthus annuus HOM05D001994 ORTHO05D001954 8.1e-23 110.9 109 59.6
HanXRQChr16g0520081 Helianthus annuus HOM05D001994 ORTHO05D001954 8.1e-23 110.9 109 59.6
Lj9C567G12 Lonicera japonica HOM05D001994 ORTHO05D001954 8.1e-23 110.9 109 59.6
Ah.05g174670 Amaranthus hybridus HOM05D001994 ORTHO05D001954 1.1e-22 110.5 110 59.1
MSTRG.28184 Avicennia marina HOM05D001994 ORTHO05D001954 1.1e-22 110.5 111 58.6
Sp4g27250 Schrenkiella parvula HOM05D001994 ORTHO05D001954 1.1e-22 110.5 111 58.6
SpUn0031_0070 Schrenkiella parvula HOM05D001994 ORTHO05D001954 1.1e-22 110.5 111 58.6
Sc02g0002710 Simmondsia chinensis HOM05D001994 ORTHO05D001954 1.1e-22 110.5 111 57.7
Aa31LG1G26750 Aethionema arabicum HOM05D001994 ORTHO05D001954 1.4e-22 110.2 111 57.7
MELO3C003263.2 Cucumis melo HOM05D001994 ORTHO05D001954 1.8e-22 109.8 123 53.7
Nn1g01089 Nelumbo nucifera HOM05D001994 ORTHO05D001954 1.8e-22 109.8 111 57.7
ClCG04G003190 Citrullus lanatus HOM05D001994 ORTHO05D001954 3.1e-22 109.0 111 55.9
AUR62004176 Chenopodium quinoa HOM05D001994 ORTHO05D001954 4.0e-22 108.6 110 58.2
AUR62013675 Chenopodium quinoa HOM05D001994 ORTHO05D001954 4.0e-22 108.6 110 58.2
Pp3c12_18190 Physcomitrium patens HOM05D001994 ORTHO05D001954 4.0e-22 108.6 77 71.4
TWI14G0332 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 4.0e-22 108.6 109 57.8
Atru.chr5.270 Acer truncatum HOM05D001994 ORTHO05D001954 5.2e-22 108.2 111 57.7
Lalb_Chr19g0127351 Lupinus albus HOM05D001994 ORTHO05D001954 5.2e-22 108.2 110 58.2
Oeu064475.1 Olea europaea HOM05D001994 ORTHO05D001954 5.2e-22 108.2 111 58.6
MSTRG.4903 Avicennia marina HOM05D001994 ORTHO05D001954 6.9e-22 107.8 111 56.8
COL.COLO4_12513 Corchorus olitorius HOM05D001994 ORTHO05D001954 9.0e-22 107.5 138 49.3
CsaV3_4G029820 Cucumis sativus L. HOM05D001994 ORTHO05D001954 9.0e-22 107.5 111 55.0
Lalb_Chr07g0190121 Lupinus albus HOM05D001994 ORTHO05D001954 1.2e-21 107.1 111 56.8
PSO017G4197 Papaver somniferum HOM05D001994 ORTHO05D001954 1.2e-21 107.1 110 57.3
PSO170G1942 Papaver somniferum HOM05D001994 ORTHO05D001954 1.2e-21 107.1 110 57.3
Sabra02G0113100 Salix brachista HOM05D001994 ORTHO05D001954 1.2e-21 107.1 112 55.4
Aqoxy5G03934 Aquilegia oxysepala HOM05D001994 ORTHO05D001954 2.0e-21 106.3 111 55.0
A04p33700 Brassica napus HOM05D001994 ORTHO05D001954 2.6e-21 105.9 107 57.9
BraA04t18832Z Brassica rapa HOM05D001994 ORTHO05D001954 2.6e-21 105.9 107 57.9
Sed0000014 Sechium edule HOM05D001994 ORTHO05D001954 2.6e-21 105.9 111 53.2
ATR0568G117 Amborella trichopoda HOM05D001994 ORTHO05D001954 3.4e-21 105.5 122 54.1
Nitab4.5_0006445g0050 Nicotiana tabacum HOM05D001994 ORTHO05D001954 7.6e-21 104.4 78 69.2
BolC4t28651H Brassica oleracea HOM05D001994 ORTHO05D001954 1.3e-20 103.6 107 57.0
Lj7A532G47 Lonicera japonica HOM05D001994 ORTHO05D001954 2.9e-20 102.4 78 69.2
Ca_25721_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 4.9e-20 101.7 120 52.5
C04p71430 Brassica napus HOM05D001994 ORTHO05D001954 6.4e-20 101.3 107 56.1
CDE11G0946 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 1.1e-19 100.5 111 55.0
vmacro13430 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 1.1e-19 100.5 150 44.0
Dinv44134 Davidia involucrata HOM05D001994 ORTHO05D001954 4.2e-19 98.6 102 56.9
CDE09G0219 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 5.4e-19 98.2 111 54.1
AagrBONN_evm.TU.Sc2ySwM_228.4803 Anthoceros agrestis HOM05D001994 ORTHO05D001954 9.3e-19 97.4 111 52.3
CARHR140430 Cardamine hirsuta HOM05D001994 ORTHO05D001954 9.3e-19 97.4 56 87.5
PGR042G2780 Punica granatum HOM05D001994 ORTHO05D001954 1.2e-18 97.1 113 51.3
Actinidia22752 Actinidia chinensis HOM05D001994 ORTHO05D001954 2.7e-18 95.9 105 60.0
Os02g0126800 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 6.0e-18 94.7 107 51.4
Pp3c4_11440 Physcomitrium patens HOM05D001994 ORTHO05D001954 6.0e-18 94.7 109 51.4
Actinidia22807 Actinidia chinensis HOM05D001994 ORTHO05D001954 2.3e-17 92.8 63 79.4
Mapoly0016s0161 Marchantia polymorpha HOM05D001994 ORTHO05D001954 6.6e-17 91.3 104 52.9
EL10Ac6g14283 Beta vulgaris HOM05D001994 ORTHO05D001954 8.7e-17 90.9 56 83.9
EL10Ac9g20882 Beta vulgaris HOM05D001994 ORTHO05D001954 2.5e-16 89.4 56 82.1
Gohir.A11G079500 Gossypium hirsutum HOM05D001994 ORTHO05D001954 2.5e-16 89.4 95 55.8
EL10Ac8g19285 Beta vulgaris HOM05D001994 ORTHO05D001954 4.3e-16 88.6 56 82.1
DCAR_010129 Daucus carota HOM05D001994 ORTHO05D001954 2.8e-15 85.9 57 82.5
SMO146G0366 Selaginella moellendorffii HOM05D001994 ORTHO05D001954 4.8e-15 85.1 107 48.6
Gohir.D11G084200 Gossypium hirsutum HOM05D001994 ORTHO05D001954 3.1e-14 82.4 81 58.0
ATR0090G047 Amborella trichopoda HOM05D001994 ORTHO05D001954 5.3e-14 81.6 122 43.4
MBI04_g25317_MAGBIO Magnolia biondii HOM05D001994 ORTHO05D001954 9.0e-14 80.9 56 71.4
CBR_g20431 Chara braunii HOM05D001994 ORTHO05D001954 1.2e-13 80.5 78 53.8
FAN03G1149 Fragaria x ananassa HOM05D001994 ORTHO05D202546 1.8e-09 66.6 79 55.7
Nn4g26396 Nelumbo nucifera HOM05D000772 ORTHO05D001954 3.0e-09 65.9 41 78.0
HanXRQChr09g0245651 Helianthus annuus HOM05D001994 ORTHO05D001954 3.9e-09 65.5 47 76.6
Zm00001eb230940 Zea mays HOM05D001994 ORTHO05D001954 9.0e-06 54.3 74 44.6


User provided reference genes

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