Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.1e-215 751.5 378 100.0
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.6e-155 552.0 290 98.6
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.9e-144 515.0 290 93.4
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.2e-127 459.1 291 83.5
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 7.9e-118 427.9 297 77.4
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 9.0e-114 414.5 286 75.9
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 9.9e-113 411.0 265 82.3
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.2e-65 254.6 293 50.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 7.5e-60 235.3 291 49.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.9e-51 206.1 297 45.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 6.3e-51 205.7 293 45.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.3e-47 193.0 300 44.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.4e-42 177.9 292 43.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.5e-41 173.3 293 42.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 7.8e-41 172.2 291 41.9
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 7.8e-41 172.2 237 45.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.1e-39 168.3 294 41.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.5e-39 167.9 292 41.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.6e-39 166.0 273 42.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.1e-38 164.1 290 39.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.8e-38 163.7 290 39.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.8e-38 163.7 290 39.7
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.8e-38 163.7 284 39.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.7e-38 162.9 286 40.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.7e-38 162.9 291 42.6
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 6.2e-38 162.5 289 40.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.2e-38 162.5 294 39.8
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.2e-38 162.5 300 39.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.1e-37 161.8 292 39.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.1e-37 161.8 294 40.8
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.8e-37 161.0 294 39.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.8e-37 161.0 285 40.4
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.3e-37 160.6 271 42.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 8.9e-37 158.7 288 39.9
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.5e-36 157.9 289 41.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.8e-36 156.0 270 43.7
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.8e-36 155.2 276 42.8
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-35 154.8 298 38.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.9e-35 153.7 294 41.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 3.7e-35 153.3 276 43.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.1e-34 151.8 290 40.0
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.4e-34 150.6 291 40.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.1e-34 149.8 295 40.7
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 7.0e-34 149.1 299 39.1
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 7.0e-34 149.1 285 42.1
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 9.2e-34 148.7 294 40.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 9.2e-34 148.7 289 38.4
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 9.2e-34 148.7 293 40.6
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.6e-33 147.9 283 35.7
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.5e-33 146.7 292 38.0
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.6e-33 146.4 276 40.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.8e-33 145.6 278 37.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-32 145.2 283 37.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.3e-32 144.8 287 35.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.3e-32 144.1 264 39.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.3e-32 144.1 300 37.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.0e-32 143.7 279 37.3
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.5e-31 140.6 287 34.8
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 7.3e-31 139.0 290 37.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 9.5e-31 138.7 232 45.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.2e-30 138.3 292 36.6
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.2e-30 138.3 267 38.2
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.7e-30 136.3 276 37.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.1e-29 135.2 279 36.6
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.3e-29 134.0 297 37.4
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.7e-27 127.9 275 39.6
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.7e-27 126.7 203 44.8
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.1e-26 123.2 251 40.2
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 7.1e-26 122.5 268 36.2
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 9.2e-26 122.1 248 38.7
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 4.6e-25 119.8 289 35.3
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.0e-24 118.6 292 34.9
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.7e-24 117.9 278 34.9
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 3.9e-24 116.7 264 37.1
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 5.1e-24 116.3 224 40.2
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.1e-24 116.3 280 35.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 8.6e-24 115.5 262 37.4
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.7e-22 109.8 286 32.9
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 4.0e-21 106.7 270 33.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.2e-21 106.3 114 52.6
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.9e-21 105.5 224 38.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.5e-20 104.8 275 29.1
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.5e-20 104.8 214 37.4
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 7.6e-20 102.4 201 39.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.9e-19 100.5 249 34.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.1e-18 98.6 117 48.7
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.4e-18 98.2 169 39.6
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.9e-18 97.8 248 35.1
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 2.4e-18 97.4 283 31.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.1e-18 96.7 110 51.8
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-18 96.7 110 51.8
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-18 96.7 110 51.8
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 5.4e-18 96.3 255 37.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 7.1e-18 95.9 116 51.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.2e-17 95.1 218 34.9
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.1e-17 94.4 190 35.8
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.5e-17 93.6 69 71.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.5e-17 93.6 69 71.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 4.6e-17 93.2 115 51.3
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 7.8e-17 92.4 275 31.3
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.0e-16 92.0 268 31.7
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.0e-16 90.5 308 30.2
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.1e-16 89.7 285 31.6
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 6.6e-16 89.4 83 57.8
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.7e-16 89.0 270 32.6
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.1e-15 88.6 265 29.8
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.5e-15 87.4 212 36.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.5e-15 87.4 266 30.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.3e-15 87.0 266 30.1
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 4.7e-14 83.2 68 63.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.7e-14 83.2 125 44.8
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 4.7e-14 83.2 189 33.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 6.2e-14 82.8 282 30.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 8.1e-14 82.4 283 28.6
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.4e-13 81.6 279 30.8
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 5.2e-13 79.7 202 29.7
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 5.2e-13 79.7 259 30.5
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 6.9e-13 79.3 68 60.3
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 6.9e-13 79.3 68 60.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 6.9e-13 79.3 265 30.9
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 9.0e-13 79.0 107 43.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.2e-12 78.6 281 31.3
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.0e-12 77.8 289 28.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.6e-12 77.4 76 56.6
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 3.4e-12 77.0 289 29.1
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 5.8e-12 76.3 212 34.4
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.8e-12 76.3 262 29.8
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 7.6e-12 75.9 123 42.3
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 9.9e-12 75.5 272 29.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.7e-11 74.7 283 30.0
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.9e-11 73.9 112 45.5
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.9e-11 73.9 210 32.9
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 4.9e-11 73.2 69 58.0
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 4.9e-11 73.2 283 29.7
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.9e-11 73.2 258 30.2
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 8.4e-11 72.4 200 34.0
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 8.4e-11 72.4 328 29.9
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.1e-10 72.0 265 30.6
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.1e-10 72.0 111 37.8
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 4.2e-10 70.1 69 56.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 4.2e-10 70.1 273 28.6
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.2e-10 70.1 77 45.5
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.3e-10 68.9 75 46.7
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.1e-09 67.8 66 59.1
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 6.0e-09 66.2 66 57.6
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.0e-08 65.5 277 28.2
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.7e-08 64.7 65 52.3
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 3.9e-08 63.5 84 40.5
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 6.6e-08 62.8 53 62.3
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 6.6e-08 62.8 122 34.4
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 8.7e-08 62.4 66 54.5
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 8.7e-08 62.4 66 47.0
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 8.7e-08 62.4 131 36.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.5e-07 61.6 221 28.5
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.3e-07 60.1 266 29.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-07 59.7 233 30.9
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 7.3e-07 59.3 109 37.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.3e-07 59.3 197 33.5
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.8e-06 56.6 118 35.6
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.8e-06 56.6 72 41.7
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 6.2e-06 56.2 241 27.0


User provided reference genes

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