Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 7.0e-130 467.2 228 100.0
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.3e-128 463.0 228 98.7
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 2.0e-124 449.1 227 96.5
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.1e-117 426.8 227 91.2
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 3.1e-117 425.2 227 90.3
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 3.2e-114 415.2 227 89.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 6.7e-96 354.4 228 73.7
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.9e-95 352.8 228 73.2
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.6e-94 349.7 228 71.9
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.4e-93 346.7 228 72.4
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.4e-93 346.7 228 71.9
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.4e-93 345.9 223 70.9
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.2e-92 343.6 224 71.9
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.5e-92 341.7 226 71.7
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 2.9e-91 339.0 228 70.2
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 3.8e-91 338.6 229 72.5
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 4.9e-91 338.2 228 66.7
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 4.9e-91 338.2 224 72.3
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 2.5e-90 335.9 224 70.5
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 2.5e-90 335.9 224 71.4
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 3.2e-90 335.5 243 66.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 7.1e-90 334.3 220 71.8
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.6e-89 333.2 228 69.7
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.7e-89 332.4 222 70.3
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 3.5e-89 332.0 224 69.2
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.5e-89 332.0 224 69.6
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 7.9e-89 330.9 232 68.5
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.0e-88 330.5 224 69.6
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.0e-88 330.5 224 70.1
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.3e-88 330.1 222 69.8
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.3e-88 330.1 234 69.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.3e-88 329.3 229 68.1
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 2.3e-88 329.3 225 68.0
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.5e-87 326.6 228 68.9
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.5e-87 326.6 225 69.8
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.7e-87 324.7 225 68.4
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 5.7e-87 324.7 228 66.2
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.6e-86 323.2 223 67.3
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 2.8e-86 322.4 224 67.0
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 6.2e-86 321.2 224 69.6
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 8.2e-86 320.9 228 67.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 8.2e-86 320.9 224 67.9
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.1e-85 320.5 228 65.8
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.4e-85 320.1 249 61.4
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-84 316.6 229 66.4
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 5.8e-84 314.7 220 66.4
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 5.8e-84 314.7 229 65.9
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 7.6e-84 314.3 208 70.7
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.0e-83 313.9 220 65.9
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.3e-83 313.5 224 65.6
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.3e-83 313.5 224 65.2
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 2.2e-83 312.8 224 66.1
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 2.2e-83 312.8 224 65.2
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.2e-83 312.8 222 66.2
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 6.5e-83 311.2 220 65.5
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 6.5e-83 311.2 224 65.2
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.1e-82 310.5 221 65.6
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 1.1e-82 310.5 220 65.0
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.1e-82 310.5 230 66.5
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.4e-82 310.1 220 66.8
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 7.1e-82 307.8 224 63.8
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 2.7e-81 305.8 225 63.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 1.0e-80 303.9 226 62.8
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 3.9e-80 302.0 224 64.3
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 3.9e-80 302.0 224 62.9
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 5.1e-80 301.6 229 62.0
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.5e-79 300.1 227 62.1
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.9e-79 299.7 220 64.1
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.9e-79 299.7 234 63.7
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.3e-79 298.9 225 60.0
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 4.3e-79 298.5 225 64.0
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.4e-79 297.7 228 62.3
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 1.6e-78 296.6 220 64.1
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 6.3e-78 294.7 220 62.7
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 6.9e-77 291.2 228 61.0
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-76 290.4 221 63.3
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.5e-76 290.0 225 62.2
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.6e-76 289.3 227 63.0
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.6e-76 289.3 225 59.1
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.0e-75 287.3 243 58.8
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.9e-75 285.8 243 58.8
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.9e-74 283.1 243 58.4
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.1e-73 279.6 221 66.1
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 6.3e-70 268.1 223 59.2
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 2.0e-68 263.1 223 58.3
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 2.0e-68 263.1 233 54.5
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.3e-67 260.4 172 71.5
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 9.4e-66 254.2 238 57.1
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 2.7e-65 252.7 220 53.6
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 7.9e-65 251.1 238 56.7
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.0e-63 246.5 169 67.5
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.2e-62 243.0 142 78.2
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.2e-62 243.0 164 65.9
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 2.4e-61 239.6 164 66.5
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 9.1e-61 237.7 164 66.5
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 2.6e-60 236.1 173 64.2
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 2.5e-58 229.6 232 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 1.2e-57 227.3 228 49.6
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 5.2e-56 221.9 173 61.8
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 5.2e-56 221.9 219 52.1
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 2.0e-55 219.9 156 64.1
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 1.1e-53 214.2 222 47.7
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.4e-53 213.8 170 61.8
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 7.0e-53 211.5 220 49.5
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.6e-52 210.3 167 62.3
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 7.7e-44 181.4 118 68.6
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.3e-43 180.6 249 42.2
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 8.5e-43 177.9 118 66.1
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.5e-42 177.2 108 75.0
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 6.1e-41 171.8 143 57.3
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 8.8e-40 167.9 134 63.4
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 8.3e-38 161.4 147 60.5
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 8.6e-35 151.4 127 57.5
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.5e-34 150.6 144 56.9
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.0e-27 125.6 106 57.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 5.6e-26 122.1 221 34.4
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.8e-17 93.2 63 66.7
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 5.8e-15 85.5 90 43.3
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 5.8e-15 85.5 90 43.3
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 2.4e-13 80.1 52 67.3
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 2.4e-13 80.1 52 67.3
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.6e-09 67.4 47 66.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 8.1e-09 65.1 183 28.4
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 4.0e-08 62.8 184 30.4
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 8.9e-08 61.6 226 28.3
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 1.2e-07 61.2 187 32.6
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 1.2e-07 61.2 226 28.3
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.0e-07 60.5 181 30.4
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 4.4e-07 59.3 226 27.4
Lsat_1_v5_gn_5_39280 Lactuca sativa HOM05D002021 ORTHO05D002077 1.3e-06 57.8 188 28.2
TAR633G2013 Trochodendron aralioides HOM05D003180 ORTHO05D003664 1.3e-06 57.8 179 27.9
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 1.3e-06 57.8 181 29.3
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.7e-06 57.4 187 30.5
PSO339G2845 Papaver somniferum HOM05D003180 ORTHO05D003664 2.2e-06 57.0 169 28.4
PSO384G1057 Papaver somniferum HOM05D003180 ORTHO05D003664 2.2e-06 57.0 170 29.4
PSO339G0869 Papaver somniferum HOM05D003180 ORTHO05D003664 6.4e-06 55.5 169 28.4
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 8.4e-06 55.1 226 26.5


User provided reference genes

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