Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 4.4e-77 291.2 144 100.0
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 4.4e-77 291.2 144 100.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 99.3
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 6.3e-76 287.3 144 98.6
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.3e-76 287.3 144 98.6
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 97.2
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 95.8
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 95.8
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.1
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.1
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 95.1
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.3e-73 279.6 141 96.5
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 94.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 94.4
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 95.1
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 94.4
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 141 95.7
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 141 95.7
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.2e-73 278.9 141 95.7
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.8
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 3.8e-73 278.1 141 95.7
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 94.4
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 93.6
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 94.4
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 5.0e-73 277.7 142 94.4
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 94.4
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 95.1
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 6.5e-73 277.3 141 96.5
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.1
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 94.4
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 93.8
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.1e-72 276.6 141 95.7
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 93.8
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 93.8
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 93.6
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 93.1
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 93.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 93.1
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 3.2e-72 275.0 141 92.9
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 93.1
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 93.8
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 93.1
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 93.1
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 5.5e-72 274.2 141 94.3
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 5.5e-72 274.2 140 94.3
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 93.1
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 7.2e-72 273.9 141 93.6
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 7.2e-72 273.9 141 93.6
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 7.2e-72 273.9 141 93.6
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 7.2e-72 273.9 141 93.6
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 92.4
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 92.4
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 92.4
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 92.4
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.6e-71 272.7 154 90.9
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.1e-71 272.3 141 92.2
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.1e-71 272.3 142 92.3
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 2.7e-71 271.9 141 92.9
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 92.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 3.6e-71 271.6 141 91.5
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.6e-71 271.6 141 91.5
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 8.0e-71 270.4 141 90.8
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 90.3
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 91.0
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.8e-70 269.2 141 92.2
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.8e-70 269.2 141 90.8
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.0e-70 268.5 141 90.8
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 6.8e-70 267.3 144 88.9
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 6.8e-70 267.3 167 80.8
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.5e-69 266.2 136 93.4
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.5e-69 266.2 138 90.6
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 3.4e-69 265.0 138 90.6
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 4.4e-69 264.6 136 92.6
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 9.8e-69 263.5 138 89.1
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.3e-68 263.1 170 78.2
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.7e-68 262.7 141 90.1
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.2e-68 262.3 143 89.5
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 89.4
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.8e-67 259.2 140 89.3
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 3.1e-67 258.5 140 87.9
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 88.6
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 87.9
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 87.9
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 9.1e-67 256.9 140 87.9
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 9.1e-67 256.9 137 89.8
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.2e-66 256.5 138 87.0
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.2e-66 256.5 143 86.0
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 88.6
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.6e-66 256.1 141 86.5
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.7e-66 255.4 140 87.9
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 2.7e-66 255.4 130 93.8
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.5e-66 254.6 140 85.7
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 2.3e-65 252.3 140 85.7
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.5e-64 249.6 140 85.0
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.5e-64 249.6 140 85.0
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 86.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 86.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 86.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 86.4
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 4.2e-64 248.1 138 84.8
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 5.5e-64 247.7 140 83.6
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 5.5e-64 247.7 140 83.6
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 5.5e-64 247.7 138 83.3
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 7.2e-64 247.3 208 65.4
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 9.5e-64 246.9 156 80.1
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.2e-63 246.5 202 65.8
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 85.0
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 8.0e-63 243.8 168 73.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 5.7e-61 237.7 138 80.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 3.7e-60 235.0 141 82.3
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 4.5e-58 228.0 140 80.0
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.7e-57 226.1 129 82.2
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.1e-56 223.4 144 70.1
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.5e-53 213.0 138 70.3
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 5.4e-51 204.5 114 86.0
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 9.2e-51 203.8 160 66.9
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.6e-50 203.0 126 77.8
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 6.0e-50 201.1 139 65.5
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.3e-49 199.1 138 63.0
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 8.6e-49 197.2 120 82.5
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 6.2e-47 191.0 99 92.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 6.8e-46 187.6 97 90.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.4e-43 179.1 117 78.6
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 1.1e-30 137.1 74 91.9
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.7e-28 129.8 71 90.1
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 6.4e-28 127.9 147 46.9
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.4e-27 126.7 71 87.3
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 3.2e-27 125.6 74 82.4
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 4.6e-26 121.7 140 50.0
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 5.1e-17 91.7 43 95.3
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 7.6e-13 77.8 157 32.5
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 7.6e-13 77.8 53 69.8
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 4.9e-12 75.1 117 37.6
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 9.3e-11 70.9 44 77.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 3.3e-08 62.4 36 75.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.2e-07 58.2 133 29.3


User provided reference genes

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