Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 1.1e-232 809.7 416 100.0
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.3e-230 802.7 416 99.3
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 2.8e-209 731.9 416 90.9
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.3e-203 712.2 422 88.4
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 7.2e-197 690.6 446 81.6
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 4.8e-193 677.9 416 85.6
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.4e-184 649.8 432 81.2
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 5.7e-146 521.5 416 66.3
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 1.3e-142 510.4 415 66.3
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 7.3e-141 504.6 337 74.8
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.8e-139 500.0 343 75.2
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.5e-138 496.9 414 63.8
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 9.8e-138 494.2 416 63.5
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.2e-135 487.3 418 62.9
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 2.7e-135 486.1 420 62.6
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 4.6e-135 485.3 414 63.8
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.0e-134 484.2 417 63.5
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 2.3e-134 483.0 415 61.2
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 8.6e-134 481.1 418 61.0
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 8.6e-134 481.1 414 63.0
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.9e-133 479.9 334 72.8
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 3.1e-131 472.6 427 60.2
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 4.0e-131 472.2 415 61.9
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.0e-130 469.9 418 61.2
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 2.2e-129 466.5 419 61.3
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.2e-128 462.6 418 60.5
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.5e-127 459.1 417 60.2
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.3e-126 457.2 415 58.3
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 2.3e-126 456.4 413 60.8
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 1.1e-125 454.1 413 58.1
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 7.3e-125 451.4 408 62.5
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 3.6e-124 449.1 420 58.6
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 6.2e-124 448.4 409 58.2
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 6.2e-124 448.4 417 59.5
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.1e-123 447.6 419 58.0
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 5.2e-123 445.3 413 56.7
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 5.2e-123 445.3 475 54.3
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.8e-121 439.1 385 60.5
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 4.9e-121 438.7 392 59.4
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 6.4e-121 438.3 415 57.6
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.9e-120 436.8 392 57.9
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 3.2e-120 436.0 389 58.9
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.2e-120 436.0 420 59.8
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 4.1e-120 435.6 419 59.2
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.1e-120 435.6 392 57.9
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 5.4e-120 435.3 415 57.1
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 7.8e-119 431.4 415 55.4
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.7e-118 430.3 420 54.8
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.7e-118 430.3 416 58.4
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.0e-118 429.5 411 58.2
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 3.9e-118 429.1 416 57.5
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 3.3e-117 426.0 425 58.4
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 3.1e-115 419.5 416 57.0
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 6.9e-115 418.3 458 52.0
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 6.9e-115 418.3 366 59.0
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 8.9e-115 417.9 416 57.9
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 2.2e-113 413.3 415 54.9
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 6.4e-113 411.8 340 60.3
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.4e-112 410.6 254 79.9
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 2.4e-112 409.8 365 59.2
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 7.1e-112 408.3 342 60.2
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 2.7e-111 406.4 410 53.7
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 3.5e-111 406.0 314 63.1
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.5e-109 399.8 414 55.3
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 3.3e-109 399.4 424 55.7
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.8e-107 393.7 413 52.8
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 2.4e-107 393.3 367 59.4
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 3.4e-106 389.4 352 57.4
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 5.8e-106 388.7 426 53.5
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 9.9e-106 387.9 415 52.3
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 6.4e-105 385.2 428 53.3
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.9e-104 383.6 409 50.6
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 3.2e-104 382.9 413 53.8
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 7.1e-104 381.7 435 51.7
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.1e-103 380.2 335 60.9
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 4.6e-103 379.0 415 52.5
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.5e-101 373.2 423 51.1
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 9.6e-101 371.3 420 51.7
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.6e-100 370.5 420 51.0
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 4.8e-100 369.0 419 51.1
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 4.8e-100 369.0 417 51.6
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.1e-99 367.9 419 50.8
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 1.4e-99 367.5 418 51.2
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.6e-98 363.2 414 51.0
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.7e-97 360.5 371 53.1
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 6.4e-97 358.6 392 52.6
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 2.1e-95 353.6 380 51.3
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 4.8e-92 342.4 416 51.2
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.5e-90 337.4 425 48.5
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 5.8e-90 335.5 340 56.5
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.4e-88 330.9 413 49.2
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 1.3e-84 317.8 432 44.9
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 2.6e-82 310.1 417 48.7
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 3.4e-82 309.7 242 63.2
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 2.5e-80 303.5 336 51.5
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 3.6e-79 299.7 314 49.4
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 5.3e-75 285.8 191 72.3
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.9e-70 269.6 220 60.9
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 1.1e-64 251.5 313 47.3
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-60 238.0 167 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.8e-54 217.6 392 34.7
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 2.0e-53 214.2 402 36.8
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.8e-52 210.3 359 37.3
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 7.7e-42 175.6 111 73.9
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.9e-41 173.7 152 59.9
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-40 171.0 111 71.2
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.0e-38 163.3 129 62.0
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.0e-37 161.0 198 50.5
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.4e-37 159.8 129 63.6
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 4.4e-37 159.8 133 62.4
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 9.2e-35 152.1 177 51.4
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 7.5e-29 132.5 129 53.5
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 8.3e-28 129.0 185 41.6
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 4.1e-27 126.7 198 34.3
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 7.0e-27 125.9 169 48.5
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 5.2e-22 109.8 219 32.4
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.6e-21 107.5 77 62.3
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 3.7e-20 103.6 81 60.5
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.4e-19 100.9 69 66.7
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.4e-19 100.9 152 44.1
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-18 98.2 61 72.1
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 4.3e-16 90.1 284 27.1
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 5.6e-16 89.7 269 28.6
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 2.6e-13 80.9 96 49.0
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 7.8e-10 69.3 54 61.1
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 5.1e-09 66.6 79 45.6
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 3.1e-06 57.4 59 45.8


User provided reference genes

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