Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 2.2e-302 1041.6 553 100.0
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 4.6e-300 1033.9 553 99.1
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 6.4e-294 1013.4 553 96.9
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.0e-275 953.0 550 91.5
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 6.7e-267 923.7 551 88.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 5.6e-266 920.6 551 88.4
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 8.5e-254 880.2 552 84.4
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 8.3e-217 757.3 558 73.3
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.6e-210 735.7 626 65.0
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 6.6e-206 721.1 566 68.9
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.6e-204 716.5 555 69.7
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.0e-203 713.8 594 66.8
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 4.3e-197 691.8 544 67.6
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 7.3e-197 691.0 549 67.4
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.1e-196 689.5 546 67.2
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.1e-195 687.2 583 65.9
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.3e-195 686.0 581 65.2
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 4.4e-194 681.8 547 67.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.9e-193 679.1 565 65.0
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 6.4e-193 677.9 532 68.8
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 5.4e-192 674.9 535 69.0
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.6e-191 673.3 544 66.2
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.1e-191 672.9 531 70.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 4.6e-191 671.8 500 71.2
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 6.0e-191 671.4 514 69.1
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 7.8e-191 671.0 532 68.4
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.0e-190 670.6 546 65.8
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 3.0e-190 669.1 566 64.1
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 3.9e-190 668.7 564 64.9
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 8.6e-190 667.5 550 66.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.5e-189 666.8 563 64.5
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 3.3e-189 665.6 545 66.1
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 5.6e-189 664.8 543 66.3
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 5.6e-189 664.8 557 65.0
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 7.3e-189 664.5 551 66.6
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 7.3e-189 664.5 551 66.6
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 9.5e-189 664.1 556 64.6
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.2e-188 663.7 566 63.8
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 2.1e-188 662.9 577 64.3
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.1e-188 662.9 550 65.3
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.4e-187 660.2 534 67.4
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.4e-187 660.2 561 64.2
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.1e-187 659.1 552 66.3
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 5.2e-187 658.3 540 67.0
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 5.2e-187 658.3 548 65.3
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 5.2e-187 658.3 580 64.1
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 6.8e-187 657.9 553 63.7
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 8.9e-187 657.5 552 63.6
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.5e-186 656.8 558 64.9
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 2.6e-186 656.0 549 65.9
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 2.6e-186 656.0 582 62.5
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 7.6e-186 654.4 552 65.9
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.3e-185 653.7 549 65.2
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.2e-185 652.9 552 63.8
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.9e-185 652.5 560 63.9
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.7e-185 652.1 530 66.8
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 6.4e-185 651.4 546 64.8
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 8.3e-185 651.0 538 65.1
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.1e-184 650.6 552 65.6
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.4e-184 650.2 538 63.6
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.4e-184 650.2 567 63.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.2e-184 649.0 532 66.5
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 3.2e-184 649.0 538 65.8
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.2e-184 649.0 538 66.0
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 5.4e-184 648.3 538 65.4
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 5.4e-184 648.3 549 65.2
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 2.1e-183 646.4 559 62.8
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 3.5e-183 645.6 546 63.4
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.0e-182 644.0 551 64.2
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 1.7e-182 643.3 548 64.6
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.7e-182 643.3 552 64.3
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.3e-182 642.9 547 64.5
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 5.1e-182 641.7 539 64.7
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 8.6e-182 641.0 548 63.3
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.1e-181 640.6 522 66.1
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.1e-181 640.6 555 62.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 1.1e-181 640.6 541 63.2
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.5e-181 639.4 542 62.0
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.2e-180 637.1 558 63.1
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 6.2e-180 634.8 539 63.3
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 4.0e-179 632.1 537 62.8
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 5.2e-179 631.7 550 60.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 6.8e-179 631.3 502 66.5
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 8.9e-179 630.9 557 64.1
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 6.4e-177 624.8 564 60.6
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 8.4e-177 624.4 545 62.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 1.6e-175 620.2 566 60.6
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 2.3e-174 616.3 547 60.1
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.3e-174 616.3 560 61.6
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.9e-173 613.2 549 61.0
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 5.3e-171 605.1 556 61.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 4.9e-169 598.6 460 68.3
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.5e-165 587.0 556 60.4
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 2.9e-153 546.2 559 55.8
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 4.2e-152 542.3 447 63.3
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.3e-148 530.8 507 60.0
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 2.9e-145 519.6 468 62.2
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 9.7e-141 504.6 503 57.5
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 8.2e-140 501.5 475 55.8
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.9e-136 490.3 580 48.3
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.0e-134 483.0 513 54.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.4e-123 446.8 394 62.4
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 7.2e-112 408.7 353 63.5
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 4.4e-109 399.4 519 44.1
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 4.8e-108 396.0 274 75.2
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.5e-106 389.4 310 65.8
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 4.2e-104 382.9 355 59.7
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.1e-103 379.0 296 68.2
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 3.4e-101 373.2 335 62.1
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 5.7e-101 372.5 304 65.1
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 8.3e-100 368.6 379 53.6
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.4e-99 367.9 304 64.1
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.2e-98 364.8 559 41.0
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 7.7e-98 362.1 395 53.4
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 3.6e-95 353.2 325 58.5
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.4e-94 351.3 325 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 5.7e-93 345.9 575 39.7
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.8e-86 324.3 508 39.0
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 3.6e-79 300.1 301 58.1
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.9e-76 290.4 256 60.9
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 5.2e-62 243.0 177 70.1
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.5e-48 198.4 506 32.6
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.4e-46 191.0 185 56.8
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 7.6e-45 186.0 269 45.7
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.1e-40 172.2 170 57.6
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 8.4e-36 156.0 418 28.0
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 6.0e-34 149.8 344 29.1
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.9e-32 144.8 116 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 7.6e-29 132.9 432 27.5
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 6.5e-28 129.8 385 27.5
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 8.5e-28 129.4 107 65.4
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 6.7e-25 119.8 349 28.1
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.8e-23 113.6 90 64.4
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.8e-22 111.7 72 70.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.0e-20 105.9 119 51.3
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 8.5e-20 102.8 156 42.9
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.0e-17 94.4 119 45.4
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.9e-17 94.0 465 25.2
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 5.1e-17 93.6 509 23.6
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 6.5e-12 76.6 235 31.1
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 8.8e-09 66.2 341 24.9
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 6.3e-07 60.1 408 21.3
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.8e-06 58.5 51 54.9
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 5.3e-06 57.0 44 61.4


User provided reference genes

Program Settings