Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 0.0e+00 1523.1 1154 100.0
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 0.0e+00 1399.4 1199 91.3
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 0.0e+00 1115.5 1159 79.6
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 0.0e+00 1110.5 1161 76.7
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 4.3e-284 981.9 1159 72.6
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 6.4e-280 968.0 1161 71.7
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.2e-249 867.5 719 86.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 5.8e-164 582.8 1204 51.5
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 6.9e-157 559.3 1175 50.3
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.2e-145 521.9 1183 53.2
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.0e-144 518.8 1181 54.4
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 8.7e-144 515.8 1155 50.6
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.2e-142 511.1 1121 55.8
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 4.1e-141 506.9 1186 53.5
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.6e-140 504.2 1131 53.3
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.6e-137 493.4 1178 52.9
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 6.7e-136 489.6 847 64.9
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 3.1e-133 480.7 1233 50.6
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 5.9e-132 476.5 1177 52.8
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 7.7e-132 476.1 1166 56.0
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.7e-131 474.9 1177 54.3
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.7e-131 474.9 1184 52.0
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.4e-130 471.9 1190 45.1
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 3.2e-130 470.7 1156 52.0
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 5.5e-130 469.9 1187 55.0
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.6e-129 468.4 825 69.8
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.6e-129 467.2 839 63.5
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 6.1e-129 466.5 1193 55.2
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.3e-128 464.5 1186 49.3
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.2e-128 463.4 1191 55.2
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 2.0e-127 461.5 810 68.5
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 9.7e-127 459.1 857 50.1
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 2.2e-126 458.0 1193 55.1
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 2.2e-126 458.0 1180 47.1
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 3.7e-126 457.2 995 53.2
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.4e-125 455.3 1159 55.2
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 2.4e-125 454.5 1189 52.4
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 2.6e-124 451.1 1158 54.7
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 2.6e-124 451.1 1187 46.8
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 5.9e-124 449.9 838 68.3
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 7.7e-124 449.5 1182 46.8
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 7.7e-124 449.5 805 63.5
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.0e-123 449.1 805 64.8
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.7e-123 448.4 1254 43.6
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.1e-122 445.7 839 68.5
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.9e-122 444.9 808 69.1
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.9e-122 444.9 830 69.0
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.5e-122 444.5 807 71.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 2.5e-122 444.5 692 76.2
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 5.5e-122 443.4 1172 48.8
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 5.5e-122 443.4 814 64.7
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 7.2e-122 443.0 842 54.3
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.1e-121 441.4 801 69.4
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.1e-121 441.4 731 68.4
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 2.6e-119 434.5 1221 43.8
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 4.4e-119 433.7 714 75.8
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 4.4e-119 433.7 1168 50.8
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 7.5e-119 433.0 1201 53.5
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.7e-115 421.8 1171 48.8
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 2.2e-115 421.4 702 70.2
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 3.8e-115 420.6 1176 51.6
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 6.5e-115 419.9 693 76.5
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.5e-114 418.7 1204 53.7
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 2.5e-114 417.9 836 66.4
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 5.5e-114 416.8 700 70.0
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.7e-113 414.5 1204 55.3
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 8.0e-113 412.9 819 67.4
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.0e-112 412.5 688 67.7
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 5.7e-111 406.8 1188 54.0
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 7.5e-111 406.4 744 70.8
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.7e-110 405.2 817 55.2
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 3.7e-110 404.1 684 66.5
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 6.3e-110 403.3 737 72.3
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 2.4e-109 401.4 1200 44.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 2.7e-108 397.9 829 61.3
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 7.7e-108 396.4 836 65.3
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 7.7e-108 396.4 823 61.8
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.7e-107 395.2 826 66.8
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 3.8e-107 394.0 827 65.5
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 8.6e-107 392.9 838 60.7
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 2.5e-106 391.3 826 60.3
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 2.5e-106 391.3 827 65.4
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 4.0e-104 384.0 828 65.8
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 3.4e-103 380.9 914 60.5
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 1.1e-101 375.9 1147 52.5
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 3.1e-101 374.4 1169 44.6
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 4.1e-101 374.0 271 68.6
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 7.3e-98 363.2 686 73.2
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.2e-95 355.9 750 60.1
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 2.6e-95 354.8 1228 45.9
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 3.4e-95 354.4 1229 45.9
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 3.9e-91 340.9 783 47.1
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 9.8e-87 326.2 1099 42.2
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.8e-81 308.1 760 55.9
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 5.8e-79 300.4 759 54.5
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 5.6e-74 283.9 259 55.2
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.6e-71 275.0 728 68.7
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 6.2e-57 227.3 163 69.3
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.2e-53 214.9 123 87.0
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.5e-50 205.3 757 42.3
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.6e-49 202.6 518 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 1.6e-44 186.0 690 64.1
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.6e-41 176.0 705 51.3
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.1e-40 173.3 247 42.1
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-38 166.4 694 63.0
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.2e-38 165.6 257 39.3
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.5e-37 162.2 701 62.1
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-35 156.4 695 62.3
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.1e-32 146.7 246 79.7
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.0e-30 140.2 307 66.8
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.0e-30 137.9 128 56.2
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 4.2e-29 134.8 197 41.1
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 9.4e-29 133.7 276 34.8
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.6e-28 131.7 664 56.9
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.0e-27 130.2 107 57.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.0e-27 130.2 100 60.0
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.1e-26 126.7 119 54.6
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.3e-25 123.2 217 86.2
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.7e-25 122.9 124 53.2
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.8e-25 121.3 94 59.6
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.9e-21 109.4 93 53.8
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 1.0e-14 87.0 258 29.8


User provided reference genes

Program Settings