Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 3.4e-305 1051.2 688 100.0
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 9.5e-279 963.4 599 95.8
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 7.4e-207 724.5 599 73.1
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 3.4e-103 380.2 599 46.7
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 7.4e-98 362.5 600 40.7
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.8e-96 357.8 599 49.2
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 3.2e-85 320.5 599 38.6
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.6e-84 317.0 610 37.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 4.6e-84 316.6 600 36.8
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 7.9e-84 315.8 599 46.2
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.2e-79 302.0 605 37.5
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 3.8e-78 297.0 573 36.8
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 1.6e-76 291.6 600 36.8
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 6.1e-76 289.7 599 35.1
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.1e-74 285.4 610 35.7
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 2.6e-74 284.3 580 35.9
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 8.8e-67 259.2 262 61.8
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 2.6e-66 257.7 289 56.4
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.4e-59 235.3 602 31.2
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 1.5e-58 231.9 599 37.6
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 1.5e-58 231.9 605 33.6
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.3e-57 228.8 601 30.4
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.4e-56 225.3 602 31.7
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 5.5e-53 213.4 151 80.8
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 3.0e-51 207.6 695 28.5
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 1.7e-46 191.8 603 33.2
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 3.8e-46 190.7 603 28.7
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 6.6e-46 189.9 441 35.1
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.5e-45 188.7 610 29.0
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.2e-44 185.7 599 28.5
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 1.2e-44 185.7 314 40.1
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.4e-43 182.2 611 29.1
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.5e-42 178.7 603 26.9
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.5e-42 178.7 606 29.0
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 7.5e-42 176.4 600 28.3
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 5.4e-40 170.2 600 28.0
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.2e-39 169.1 618 26.7
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.5e-39 167.5 596 29.5
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 4.5e-39 167.2 599 26.7
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 7.8e-39 166.4 261 40.2
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 3.3e-37 161.0 456 31.4
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 4.3e-37 160.6 599 25.7
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 9.5e-37 159.5 455 32.5
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 5.2e-35 153.7 598 26.9
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.4e-34 151.0 698 23.6
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 9.8e-34 149.4 605 26.6
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 3.7e-33 147.5 604 26.2
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 1.4e-32 145.6 602 26.2
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.9e-32 145.2 600 25.5
CAN.G909.12 Capsicum annuum HOM05D004923 ORTHO05D005940 4.1e-32 144.1 148 58.8
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 9.2e-32 142.9 260 32.7
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.0e-31 141.7 602 25.6
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 2.7e-31 141.4 596 24.5
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 7.8e-31 139.8 635 26.0
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.3e-30 139.0 635 26.0
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 2.3e-30 138.3 606 26.9
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.5e-29 135.6 602 26.1
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.9e-29 135.2 233 33.5
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 4.3e-29 134.0 233 33.0
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 7.3e-29 133.3 282 35.1
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 9.5e-29 132.9 599 27.0
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 9.5e-29 132.9 597 24.8
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.8e-28 131.3 477 27.7
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.8e-27 128.6 596 26.2
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.8e-27 128.6 596 25.0
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.3e-27 128.3 600 26.2
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 6.8e-27 126.7 592 26.9
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.2e-26 125.9 597 25.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.2e-25 121.7 595 24.4
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 3.7e-25 120.9 604 24.7
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 3.7e-25 120.9 598 25.8
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.9e-24 118.6 603 24.9
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 3.2e-24 117.9 656 25.8
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.1e-24 117.5 606 24.6
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 4.1e-24 117.5 597 26.1
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 4.1e-24 117.5 597 26.1
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 4.1e-24 117.5 596 27.0
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.5e-23 114.4 316 30.7
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.5e-23 114.4 599 25.0
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.5e-23 114.4 632 23.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 7.8e-23 113.2 459 27.5
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.3e-22 112.5 206 33.5
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 1.7e-22 112.1 479 26.7
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 3.0e-22 111.3 646 23.4
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 3.0e-22 111.3 457 26.5
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 6.6e-22 110.2 326 28.5
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.1e-21 109.4 302 32.5
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.1e-21 109.4 621 24.0
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.9e-21 108.6 609 24.8
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 4.3e-21 107.5 509 26.1
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 4.3e-21 107.5 388 30.4
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.2e-20 105.9 597 25.6
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.2e-20 105.9 422 28.4
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-19 102.4 599 23.5
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.8e-19 102.1 365 30.4
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 2.3e-19 101.7 188 36.7
CAN.G652.6 Capsicum annuum HOM05D004923 ORTHO05D005940 2.3e-19 101.7 74 75.7
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 6.8e-19 100.1 728 22.7
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 6.8e-19 100.1 699 22.3
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 6.8e-19 100.1 345 29.6
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 8.9e-19 99.8 629 23.5
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 2.2e-17 95.1 598 23.4
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 2.9e-17 94.7 345 28.1
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.9e-17 94.0 599 22.7
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 8.3e-17 93.2 596 22.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 8.3e-17 93.2 602 23.4
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 8.3e-17 93.2 600 24.0
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 1.1e-16 92.8 232 30.2
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.4e-16 92.4 599 23.2
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 1.4e-16 92.4 602 21.8
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 2.4e-16 91.7 259 29.3
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 7.1e-16 90.1 608 23.5
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 4.6e-15 87.4 599 21.7
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.3e-14 85.9 245 25.7
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.3e-14 85.9 599 22.5
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.1e-13 82.8 596 23.3
CAN.G213.13 Capsicum annuum HOM05D000181 ORTHO05D005940 1.1e-13 82.8 78 55.1
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 3.3e-13 81.3 506 25.3
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 4.3e-13 80.9 418 24.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.6e-12 79.0 277 26.0
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.6e-12 77.8 264 26.5
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 4.7e-12 77.4 606 22.4
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 8.1e-12 76.6 597 22.1
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.1e-11 76.3 135 34.8
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.5e-10 72.4 600 22.5
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.5e-10 72.4 161 32.9
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 4.4e-10 70.9 180 33.3
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 9.9e-10 69.7 146 33.6
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 8.4e-09 66.6 203 28.6
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 2.4e-08 65.1 177 29.4
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.1e-07 62.0 518 21.4
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 6.6e-06 57.0 99 37.4


User provided reference genes

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