Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110550.3 Solanum lycopersicum HOM05D000586 ORTHO05D008681 6.9e-106 387.5 222 100.0
Sopen01g052670 Solanum pennellii HOM05D000586 ORTHO05D008681 4.2e-103 378.3 222 97.3
Nitab4.5_0002096g0050 Nicotiana tabacum HOM05D000586 ORTHO05D008681 8.2e-91 337.4 229 84.7
Nitab4.5_0010885g0020 Nicotiana tabacum HOM05D000586 ORTHO05D008681 1.5e-89 333.2 229 82.1
PGSC0003DMG400001616 Solanum tuberosum HOM05D000586 ORTHO05D008681 2.6e-84 315.8 201 93.0
CAN.G1329.7 Capsicum annuum HOM05D000586 ORTHO05D008681 1.8e-82 309.7 231 83.5
Peaxi162Scf00362g01176 Petunia axillaris HOM05D000586 ORTHO05D008681 8.2e-75 284.3 232 75.0
Dinv41988 Davidia involucrata HOM05D000586 ORTHO05D008681 1.2e-65 253.8 171 81.3
Nn6g32309 Nelumbo nucifera HOM05D000586 ORTHO05D008681 1.5e-63 246.9 174 78.7
Thecc.02G073100 Theobroma cacao HOM05D000586 ORTHO05D008681 1.9e-63 246.5 221 67.4
TAR381G1606 Trochodendron aralioides HOM05D000586 ORTHO05D008681 4.2e-63 245.4 213 69.5
MSTRG.20023 Avicennia marina HOM05D000586 ORTHO05D008681 1.6e-62 243.4 172 78.5
Actinidia20476 Actinidia chinensis HOM05D000586 ORTHO05D008681 2.1e-62 243.0 177 76.8
PGR042G2570 Punica granatum HOM05D000586 ORTHO05D008681 2.1e-62 243.0 170 78.8
SalBow6G4654 Salvia bowleyana HOM05D000586 ORTHO05D008681 2.7e-62 242.7 173 77.5
CiPaw.05G074600 Carya illinoinensis HOM05D000586 ORTHO05D008681 8.0e-62 241.1 171 79.5
Dinv23444 Davidia involucrata HOM05D000586 ORTHO05D008681 1.0e-61 240.7 177 77.4
BolC7t46503H Brassica oleracea HOM05D000586 ORTHO05D008681 2.3e-61 239.6 185 74.6
MD00G1066800 Malus domestica HOM05D000586 ORTHO05D008681 2.3e-61 239.6 228 64.0
Potri.004G164200 Populus trichocarpa HOM05D000586 ORTHO05D008681 2.3e-61 239.6 170 78.8
Haze_02225 Corylus avellana HOM05D000586 ORTHO05D008681 4.0e-61 238.8 170 77.1
Migut.B00127 Erythranthe guttata HOM05D000586 ORTHO05D008681 4.0e-61 238.8 177 76.3
BcaNung04297 Brassica carinata HOM05D000586 ORTHO05D008681 6.8e-61 238.0 185 74.6
BraA01t00363Z Brassica rapa HOM05D000586 ORTHO05D008681 6.8e-61 238.0 179 76.0
Gorai.001G244200 Gossypium raimondii HOM05D000586 ORTHO05D008681 6.8e-61 238.0 201 69.7
Ciclev10029227m.g Citrus clementina HOM05D000586 ORTHO05D008681 8.8e-61 237.7 177 76.3
Manes.11G092006 Manihot esculenta HOM05D000586 ORTHO05D008681 8.8e-61 237.7 170 79.4
Oeu020677.1 Olea europaea HOM05D000586 ORTHO05D008681 8.8e-61 237.7 197 70.1
C07p60740 Brassica napus HOM05D000586 ORTHO05D001010 1.2e-60 237.3 184 73.4
Gohir.D13G090500 Gossypium hirsutum HOM05D000586 ORTHO05D008681 1.2e-60 237.3 201 69.7
QL11p046751 Quercus lobata HOM05D000586 ORTHO05D008681 1.2e-60 237.3 169 78.7
Sabra04G0110300 Salix brachista HOM05D000586 ORTHO05D008681 1.2e-60 237.3 170 78.2
EL10Ac9g21609 Beta vulgaris HOM05D000586 ORTHO05D008681 2.0e-60 236.5 171 74.9
Cpa.g.sc150.2 Carica papaya HOM05D000586 ORTHO05D008681 2.0e-60 236.5 201 68.2
AUR62016853 Chenopodium quinoa HOM05D000586 ORTHO05D008681 2.0e-60 236.5 220 67.3
FvH4_2g10740 Fragaria vesca HOM05D000586 ORTHO05D008681 2.0e-60 236.5 187 73.3
FAN24G2793 Fragaria x ananassa HOM05D000586 ORTHO05D008681 2.0e-60 236.5 237 63.3
BcaNung00666 Brassica carinata HOM05D000586 ORTHO05D008681 3.4e-60 235.7 179 74.9
A01p03780 Brassica napus HOM05D000586 ORTHO05D003356 3.4e-60 235.7 179 74.9
Prupe.8G082300 Prunus persica HOM05D000586 ORTHO05D008681 3.4e-60 235.7 170 77.1
arahy.Tifrunner.gnm1.ann1.89FNHL Arachis hypogaea HOM05D000586 ORTHO05D008681 4.4e-60 235.3 167 77.2
AT4G34730 Arabidopsis thaliana HOM05D000586 ORTHO05D008681 7.5e-60 234.6 170 75.9
FAN20G2293 Fragaria x ananassa HOM05D000586 ORTHO05D008681 7.5e-60 234.6 229 64.2
THA.LOC104807288 Tarenaya hassleriana HOM05D000586 ORTHO05D008681 9.8e-60 234.2 174 75.9
Carub.0007s0556 Capsella rubella HOM05D000586 ORTHO05D008681 1.3e-59 233.8 173 75.1
AL7G16470 Arabidopsis lyrata HOM05D000586 ORTHO05D008681 2.2e-59 233.0 173 75.1
Sp7g32510 Schrenkiella parvula HOM05D000586 ORTHO05D008681 2.2e-59 233.0 176 75.6
C01p04060 Brassica napus HOM05D000586 ORTHO05D003356 2.8e-59 232.6 177 74.0
DCAR_022927 Daucus carota HOM05D000586 ORTHO05D008681 2.8e-59 232.6 206 65.5
CARHR243030 Cardamine hirsuta HOM05D000586 ORTHO05D008681 3.7e-59 232.3 173 74.0
Duzib052G0483 Durio zibethinus HOM05D000586 ORTHO05D008681 3.7e-59 232.3 224 65.6
Thhalv10026220m.g Eutrema salsugineum HOM05D000586 ORTHO05D008681 3.7e-59 232.3 172 76.7
MBI05_g26502_MAGBIO Magnolia biondii HOM05D000586 ORTHO05D008681 3.7e-59 232.3 214 65.4
Ah.01g018630 Amaranthus hybridus HOM05D000586 ORTHO05D008681 4.9e-59 231.9 171 72.5
BolC1t00397H Brassica oleracea HOM05D000586 ORTHO05D003356 4.9e-59 231.9 176 74.4
RcHm_v2.0_Chr6g0268531 Rosa chinensis HOM05D000586 ORTHO05D008681 4.9e-59 231.9 225 64.0
Aa31LG2G15790 Aethionema arabicum HOM05D000586 ORTHO05D008681 6.3e-59 231.5 173 74.6
Glyma.06G007300 Glycine max HOM05D000586 ORTHO05D008681 6.3e-59 231.5 172 73.8
FAN15G3000 Fragaria x ananassa HOM05D000586 ORTHO05D008681 1.8e-58 229.9 167 77.8
Lj1g0002953 Lotus japonicus HOM05D000586 ORTHO05D008681 1.8e-58 229.9 173 74.0
Sc08g0000980 Simmondsia chinensis HOM05D000586 ORTHO05D008681 1.8e-58 229.9 173 74.0
AUR62010365 Chenopodium quinoa HOM05D000586 ORTHO05D008681 2.4e-58 229.6 168 81.5
Lalb_Chr16g0391381 Lupinus albus HOM05D000586 ORTHO05D008681 2.4e-58 229.6 178 73.0
COL.COLO4_10614 Corchorus olitorius HOM05D000586 ORTHO05D008681 3.1e-58 229.2 176 75.0
arahy.Tifrunner.gnm1.ann1.I5P0FU Arachis hypogaea HOM05D000586 ORTHO05D008681 5.4e-58 228.4 163 77.3
A03p63110 Brassica napus HOM05D000586 ORTHO05D001010 5.4e-58 228.4 175 72.6
BraA03t15387Z Brassica rapa HOM05D000586 ORTHO05D008681 5.4e-58 228.4 175 72.6
Lsat_1_v5_gn_4_67621 Lactuca sativa HOM05D000586 ORTHO05D008681 5.4e-58 228.4 202 65.8
Aqoxy5G01445 Aquilegia oxysepala HOM05D000586 ORTHO05D008681 7.0e-58 228.0 202 66.8
ClCG11G003770 Citrullus lanatus HOM05D000586 ORTHO05D008681 1.2e-57 227.3 171 74.3
CDE01G0237 Ceratophyllum demersum HOM05D000586 ORTHO05D008681 2.7e-57 226.1 235 60.4
Eucgr.G01743 Eucalyptus grandis HOM05D000586 ORTHO05D008681 2.7e-57 226.1 238 61.8
HanXRQChr10g0294191 Helianthus annuus HOM05D000586 ORTHO05D008681 4.5e-57 225.3 170 73.5
Psat5g000280 Pisum sativum HOM05D000586 ORTHO05D008681 4.5e-57 225.3 191 71.2
VMungo1309G1236 Vigna mungo HOM05D000586 ORTHO05D008681 4.5e-57 225.3 168 72.0
Phvul.009G002100 Phaseolus vulgaris HOM05D000586 ORTHO05D008681 5.9e-57 224.9 168 72.0
Ca_15328_v3 Cicer arietinum L. HOM05D000586 ORTHO05D008681 1.0e-56 224.2 192 69.3
CsaV3_2G015360 Cucumis sativus L. HOM05D000586 ORTHO05D008681 1.7e-56 223.4 170 72.9
Sed0014971 Sechium edule HOM05D000586 ORTHO05D008681 1.7e-56 223.4 190 67.4
PSO170G6416 Papaver somniferum HOM05D000586 ORTHO05D008681 1.1e-55 220.7 227 58.1
unitig_60.g25431 Utricularia gibba HOM05D000586 ORTHO05D008681 1.9e-55 219.9 162 75.9
Medtr3g117600 Medicago truncatula HOM05D000586 ORTHO05D008681 2.5e-55 219.5 197 68.0
Lj9A383T66 Lonicera japonica HOM05D000586 ORTHO05D008681 4.3e-55 218.8 172 71.5
Zm00001eb377790 Zea mays HOM05D000586 ORTHO05D008681 4.3e-55 218.8 178 67.4
Hma1.2p1_0032F.1_g019990 Hydrangea macrophylla HOM05D000586 ORTHO05D008681 7.3e-55 218.0 123 91.9
PSO210G2611 Papaver somniferum HOM05D000586 ORTHO05D008681 7.3e-55 218.0 227 57.7
ECA234G3975 Erigeron canadensis HOM05D000586 ORTHO05D008681 1.2e-54 217.2 159 75.5
HPP92_020672 Vanilla planifolia HOM05D000586 ORTHO05D008681 2.8e-54 216.1 221 67.9
CANSAT11G1696 Cannabis sativa HOM05D000586 ORTHO05D008681 1.8e-53 213.4 190 68.4
Os06g0137600 Oryza sativa ssp. japonica HOM05D000586 ORTHO05D008681 4.0e-53 212.2 181 66.9
Hund06294 Selenicereus undatus HOM05D000586 ORTHO05D008681 3.4e-52 209.1 167 67.1
Cc02_g16800 Coffea canephora HOM05D000586 ORTHO05D008681 3.7e-51 205.7 148 78.4
MELO3C020750.2 Cucumis melo HOM05D000586 ORTHO05D008681 4.9e-51 205.3 191 63.9
Oeu046110.1 Olea europaea HOM05D000586 ORTHO05D008681 2.4e-50 203.0 157 75.8
VMungo1309G1424 Vigna mungo HOM05D000586 ORTHO05D008681 2.4e-50 203.0 121 86.0
Lj9A385G33 Lonicera japonica HOM05D000586 ORTHO05D008681 4.1e-50 202.2 160 71.9
vmacro02046 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 5.4e-50 201.8 126 84.1
vmacro22695 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 5.4e-50 201.8 126 84.1
GSVIVG01024154001 Vitis vinifera HOM05D000586 ORTHO05D008681 7.0e-50 201.4 147 75.5
Gohir.A13G086800 Gossypium hirsutum HOM05D000586 ORTHO05D008681 2.7e-49 199.5 214 59.8
SMO337G0057 Selaginella moellendorffii HOM05D000586 ORTHO05D008681 5.9e-49 198.4 164 62.8
Rhsim11G0184900 Rhododendron simsii HOM05D000586 ORTHO05D008681 2.3e-48 196.4 168 66.1
Duzib132G1196 Durio zibethinus HOM05D000586 ORTHO05D008681 1.0e-45 187.6 193 62.2
SGA_v2.0_scaffold58G20435 Striga asiatica HOM05D000586 ORTHO05D008681 2.3e-45 186.4 267 47.2
Pp3c12_16410 Physcomitrium patens HOM05D000586 ORTHO05D008681 3.1e-45 186.0 154 63.0
AagrBONN_evm.TU.Sc2ySwM_228.435 Anthoceros agrestis HOM05D000586 ORTHO05D008681 8.9e-45 184.5 157 61.1
CBR_g38914 Chara braunii HOM05D000586 ORTHO05D008681 3.7e-43 179.1 137 65.7
Mapoly0005s0278 Marchantia polymorpha HOM05D000586 ORTHO05D008681 1.0e-40 171.0 159 56.6
TPR.G32182 Trifolium pratense HOM05D000586 ORTHO05D008681 3.9e-40 169.1 149 69.1
MCO15G163 Micromonas commoda HOM05D000586 ORTHO05D008681 6.0e-33 145.2 138 52.9
CSS0047409 Camellia sinensis var. sinensis HOM05D000586 ORTHO05D008681 2.1e-30 136.7 108 69.4
SEGI_30788 Sequoiadendron giganteum HOM05D000586 ORTHO05D008681 7.1e-26 121.7 98 62.2
ATR0910G002 Amborella trichopoda HOM05D000586 ORTHO05D008681 2.1e-25 120.2 118 57.6
Cre02.g145000 Chlamydomonas reinhardtii HOM05D000586 ORTHO05D008681 3.9e-24 115.9 139 46.0
Sed0014045 Sechium edule HOM05D000586 ORTHO05D008681 8.6e-24 114.8 167 47.9
Nn017s41473 Nelumbo nucifera HOM05D000586 ORTHO05D008681 9.6e-23 111.3 72 84.7
PRCOL_00004217 Prasinoderma coloniale HOM05D000586 ORTHO05D008681 3.6e-22 109.4 135 43.0
BcaB07g33434 Brassica carinata HOM05D000586 ORTHO05D008681 3.8e-19 99.4 71 77.5
Atru.chr5.3178 Acer truncatum HOM05D000586 ORTHO05D008681 6.4e-19 98.6 98 60.2
VMungo0720G0167 Vigna mungo HOM05D000028 ORTHO05D001812 3.2e-18 96.3 71 70.4
MD10G1061600 Malus domestica HOM05D000586 ORTHO05D008681 4.5e-12 75.9 56 66.1


User provided reference genes

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