Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 1.5e-43 179.1 91 100.0
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 1.5e-43 179.1 91 100.0
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 1.1e-30 136.3 92 77.2
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 2.1e-29 132.1 91 75.8
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 2.8e-29 131.7 91 75.8
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.1e-28 129.8 91 70.3
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 1.8e-28 129.0 90 72.2
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 2.4e-28 128.6 92 72.8
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.1e-28 128.3 91 69.2
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 4.0e-28 127.9 101 69.3
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 9.0e-28 126.7 91 74.7
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 9.0e-28 126.7 94 70.2
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 9.0e-28 126.7 96 69.8
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 2.0e-27 125.6 91 74.7
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 3.4e-27 124.8 92 72.8
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 3.4e-27 124.8 91 72.5
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 4.5e-27 124.4 87 80.5
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 5.8e-27 124.0 89 68.5
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 5.8e-27 124.0 89 68.5
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 7.6e-27 123.6 99 64.6
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 7.6e-27 123.6 91 70.3
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 1.0e-26 123.2 91 69.2
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 1.7e-26 122.5 91 73.6
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.2e-26 122.1 91 68.1
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 2.2e-26 122.1 94 71.3
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 2.2e-26 122.1 96 68.8
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 3.8e-26 121.3 89 75.3
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 3.8e-26 121.3 91 71.4
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 3.8e-26 121.3 91 68.1
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 4.9e-26 120.9 87 71.3
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 4.9e-26 120.9 101 64.4
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 6.5e-26 120.6 91 68.1
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 8.4e-26 120.2 89 71.9
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 1.1e-25 119.8 96 66.7
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 1.4e-25 119.4 89 70.8
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 1.9e-25 119.0 98 67.3
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 2.5e-25 118.6 91 73.6
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 7.1e-25 117.1 91 70.3
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 9.3e-25 116.7 94 69.1
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 9.3e-25 116.7 80 77.5
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 2.1e-24 115.5 93 68.8
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 2.7e-24 115.2 90 68.9
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 3.5e-24 114.8 91 65.9
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 3.5e-24 114.8 89 67.4
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 4.6e-24 114.4 93 66.7
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 3.0e-23 111.7 99 62.6
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 5.1e-23 110.9 89 66.3
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 8.7e-23 110.2 83 69.9
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 8.7e-23 110.2 91 65.9
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 8.7e-23 110.2 98 62.2
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 1.1e-22 109.8 97 64.9
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 1.1e-22 109.8 101 63.4
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 1.9e-22 109.0 97 62.9
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 1.9e-22 109.0 97 62.9
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 1.9e-22 109.0 91 65.9
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 2.5e-22 108.6 96 61.5
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 4.3e-22 107.8 94 61.7
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 4.3e-22 107.8 91 63.7
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 5.7e-22 107.5 76 75.0
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 7.4e-22 107.1 64 84.4
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 7.4e-22 107.1 64 84.4
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 9.7e-22 106.7 97 58.8
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 1.3e-21 106.3 99 59.6
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 1.6e-21 105.9 90 61.1
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 1.6e-21 105.9 99 61.6
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 2.2e-21 105.5 93 61.3
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 2.2e-21 105.5 93 61.3
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 2.2e-21 105.5 93 62.4
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 2.2e-21 105.5 93 61.3
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 2.2e-21 105.5 85 65.9
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 2.8e-21 105.1 101 62.4
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 2.8e-21 105.1 87 64.4
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 3.7e-21 104.8 87 64.4
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 3.7e-21 104.8 94 58.5
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 3.7e-21 104.8 94 58.5
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 4.8e-21 104.4 87 66.7
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 6.3e-21 104.0 89 65.2
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 8.2e-21 103.6 92 64.1
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 8.2e-21 103.6 90 60.0
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 1.1e-20 103.2 91 60.4
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 1.4e-20 102.8 93 60.2
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.4e-20 102.8 81 71.6
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 1.4e-20 102.8 78 70.5
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 1.8e-20 102.4 92 62.0
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 3.1e-20 101.7 79 70.9
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 4.1e-20 101.3 78 66.7
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 4.1e-20 101.3 91 63.7
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 1.2e-19 99.8 54 85.2
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 2.0e-19 99.0 54 83.3
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 5.9e-19 97.4 91 57.1
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 7.6e-19 97.1 54 85.2
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 1.3e-18 96.3 78 69.2
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 1.7e-18 95.9 103 59.2
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 1.7e-18 95.9 61 83.6
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 8.5e-18 93.6 75 66.7
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 1.1e-17 93.2 80 70.0
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 7.2e-17 90.5 72 66.7
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 1.6e-16 89.4 79 60.8
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 6.1e-16 87.4 81 60.5
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 1.0e-15 86.7 84 59.5
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 1.4e-15 86.3 76 61.8
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 1.1e-14 83.2 77 61.0
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.3e-14 81.6 79 58.2
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 2.8e-13 78.6 56 76.8
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 4.8e-13 77.8 80 57.5
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 6.3e-13 77.4 50 84.0
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 2.4e-12 75.5 72 61.1
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 4.1e-12 74.7 71 56.3
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 3.8e-10 68.2 52 63.5
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.1e-08 62.4 43 81.4
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.1e-08 62.4 43 81.4
SGA_v2.0_scaffold20G09268 Striga asiatica HOM05D007113 ORTHO05D008859 5.7e-06 54.3 47 57.4


User provided reference genes

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