Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.9e-193 678.3 332 100.0
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 4.3e-160 568.2 355 82.3
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.3e-144 515.4 353 73.9
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 8.7e-137 490.7 353 70.5
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.5e-136 489.2 347 72.6
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.3e-136 488.8 348 71.8
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.6e-136 488.0 347 72.9
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 9.6e-136 487.3 353 70.0
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 4.9e-132 474.9 348 71.0
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.8e-105 386.7 308 68.5
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.9e-104 383.3 282 64.5
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 6.3e-103 378.3 274 67.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.0e-100 370.9 273 66.7
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.9e-97 359.0 339 54.9
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.7e-95 353.6 366 50.8
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.1e-94 350.9 340 57.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.4e-94 349.7 274 63.1
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.4e-94 349.7 283 62.9
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.9e-94 348.2 268 63.4
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.9e-94 348.2 268 63.4
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.2e-93 347.4 340 55.0
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.9e-93 345.1 267 64.4
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.0e-92 344.4 272 62.1
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.3e-92 344.0 342 50.3
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-92 343.6 357 51.5
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.7e-92 343.6 267 62.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.1e-91 340.9 269 61.0
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 4.2e-91 339.0 269 59.5
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.2e-91 339.0 274 60.2
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 7.2e-91 338.2 350 54.0
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.7e-90 336.3 351 51.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.8e-89 333.6 356 50.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.3e-89 333.2 350 52.9
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.3e-89 333.2 347 53.0
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.0e-89 332.8 274 59.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.9e-89 332.4 356 50.6
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.2e-89 332.0 284 58.5
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 6.7e-89 331.6 363 50.4
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.7e-89 331.6 273 59.7
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 8.8e-89 331.3 357 51.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 9.7e-88 327.8 273 60.8
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.3e-87 327.4 274 59.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.2e-87 326.6 281 55.2
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.8e-87 326.2 268 61.2
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 3.7e-87 325.9 267 59.2
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 6.3e-87 325.1 372 49.2
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 6.3e-87 325.1 372 49.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 8.2e-87 324.7 281 56.6
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 8.2e-87 324.7 351 52.1
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.8e-86 323.6 283 55.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 2.4e-86 323.2 267 58.4
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 4.1e-86 322.4 271 58.3
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 7.0e-86 321.6 336 50.6
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 9.1e-86 321.2 271 57.2
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 9.1e-86 321.2 266 59.4
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.2e-85 320.9 269 58.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-85 320.5 267 58.4
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 4.5e-85 318.9 264 56.8
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.9e-85 318.5 357 49.3
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.2e-84 316.6 325 52.6
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.9e-84 316.2 285 54.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 2.9e-84 316.2 271 56.8
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.1e-83 314.3 367 46.6
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-83 314.3 359 49.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 4.2e-83 312.4 359 48.7
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.7e-82 308.9 348 48.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 4.7e-82 308.9 268 55.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.7e-82 308.9 275 54.9
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 6.1e-82 308.5 268 57.1
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.0e-81 307.8 268 55.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.4e-81 307.4 348 47.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 5.2e-81 305.4 343 49.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.7e-81 305.1 271 56.5
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 6.7e-81 305.1 273 55.3
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 6.7e-81 305.1 273 55.7
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 8.8e-81 304.7 273 55.3
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.5e-80 303.9 268 56.0
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.0e-80 303.5 339 48.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.0e-80 303.5 226 63.7
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.0e-80 303.5 273 52.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.0e-80 303.5 353 48.4
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 3.3e-80 302.8 275 56.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 3.3e-80 302.8 344 49.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 7.5e-80 301.6 266 56.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 9.7e-80 301.2 343 48.7
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.3e-79 300.8 266 56.8
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 3.7e-79 299.3 341 49.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 6.3e-79 298.5 266 56.4
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.1e-78 297.7 273 54.9
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.4e-78 296.6 332 49.1
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.1e-78 296.2 345 47.5
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 4.1e-78 295.8 265 59.2
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.1e-78 295.8 288 52.8
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.6e-77 293.9 360 46.9
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 2.0e-77 293.5 340 48.5
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.7e-77 293.1 283 53.4
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 5.9e-77 292.0 333 48.3
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 3.8e-76 289.3 334 46.4
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.2e-75 286.2 268 54.9
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 5.5e-75 285.4 346 47.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.5e-75 285.4 297 49.8
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.5e-75 285.4 297 49.8
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.5e-75 285.4 297 49.8
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 7.2e-75 285.0 348 46.6
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 9.4e-75 284.6 347 46.1
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 9.4e-75 284.6 344 46.2
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 3.6e-74 282.7 353 46.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.0e-74 281.6 272 54.8
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.8e-73 280.4 339 46.6
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.0e-73 279.6 328 47.0
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 3.0e-73 279.6 343 46.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 5.2e-73 278.9 328 47.3
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 5.2e-73 278.9 342 44.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 8.8e-73 278.1 266 50.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.2e-72 277.7 347 46.1
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.2e-72 277.7 354 46.6
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.5e-72 277.3 292 48.3
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.0e-72 276.9 355 43.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.0e-72 276.9 328 46.6
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 7.5e-72 275.0 336 46.7
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.5e-72 275.0 382 42.9
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.7e-71 273.9 338 43.5
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.8e-71 272.3 319 48.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 6.3e-71 271.9 236 57.2
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 8.3e-71 271.6 268 52.2
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 7.7e-69 265.0 331 47.4
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 8.6e-68 261.5 302 49.0
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.9e-67 260.4 258 52.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 3.3e-67 259.6 274 49.6
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.0e-65 254.6 306 45.8
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.0e-65 254.6 218 60.6
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.3e-65 253.4 344 43.9
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.2e-64 251.1 300 47.3
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.4e-64 249.6 252 50.4
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 7.5e-64 248.4 274 48.2
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 7.5e-64 248.4 274 48.2
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 4.9e-63 245.7 274 47.8
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.4e-62 244.2 306 45.8
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.8e-62 243.8 356 42.1
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.7e-61 240.0 289 46.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 3.4e-56 223.0 311 39.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.0e-53 213.8 160 61.2
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.0e-53 212.2 357 39.2
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.0e-53 212.2 214 50.9
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.0e-50 201.8 288 39.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 5.2e-49 199.1 262 43.5
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 8.3e-47 191.8 312 38.8
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.1e-45 187.2 302 40.4
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.9e-44 183.0 128 65.6
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.6e-44 182.2 264 39.8
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 2.2e-39 167.2 184 45.7
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.7e-39 166.4 181 49.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.1e-37 160.6 253 38.7
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.6e-37 159.5 141 53.2
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.3e-31 141.4 450 25.8
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 3.0e-28 130.2 163 41.7
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.6e-28 129.0 159 47.2
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 7.3e-27 125.6 193 43.5
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.4e-25 120.6 164 42.7
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.4e-24 116.3 83 67.5
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 5.8e-24 115.9 201 36.3
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.2e-23 114.0 77 64.9
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.4e-22 111.3 111 49.5
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 3.5e-21 106.7 284 27.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.3e-20 104.0 90 56.7
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.1e-17 95.1 101 48.5
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 5.3e-17 92.8 105 42.9
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 8.4e-15 85.5 83 48.2
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.4e-14 84.7 83 47.0
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.9e-14 84.3 134 38.8
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.9e-14 84.3 289 26.6
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 4.2e-14 83.2 138 34.1
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.2e-14 83.2 105 43.8
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-12 78.2 76 51.3
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.5e-11 73.9 57 56.1
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.6e-11 72.0 49 71.4
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 3.1e-09 67.0 43 69.8
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 5.3e-09 66.2 55 60.0
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.2e-08 65.1 113 33.6
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.0e-08 64.3 56 57.1
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 7.6e-08 62.4 43 69.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.9e-07 60.5 47 66.0
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 2.5e-06 57.4 43 62.8


User provided reference genes

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