Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 7.3e-184 647.1 336 100.0
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.5e-178 628.2 329 98.8
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 3.2e-171 605.1 342 93.6
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 4.8e-135 485.0 298 86.6
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.2e-135 484.2 337 77.7
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.8e-127 458.4 283 81.3
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.4e-126 456.1 330 75.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 9.1e-126 454.1 329 72.3
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 7.7e-125 451.1 332 72.0
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.3e-124 450.3 288 78.5
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.2e-124 449.5 284 79.6
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 2.2e-124 449.5 281 80.8
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.9e-124 449.1 277 81.9
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.9e-124 449.1 331 71.9
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.9e-124 449.1 311 75.2
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.8e-124 448.7 334 71.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 8.5e-124 447.6 279 80.3
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 4.2e-123 445.3 308 75.3
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 2.7e-122 442.6 287 78.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 8.0e-122 441.0 288 76.0
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.0e-121 440.7 278 79.9
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 6.7e-121 438.0 284 76.8
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.6e-120 436.0 288 75.3
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 5.7e-120 434.9 279 77.1
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.7e-119 433.3 281 75.4
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 4.8e-119 431.8 277 78.7
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 6.3e-119 431.4 277 77.3
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.3e-118 428.3 277 78.0
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 5.3e-118 428.3 291 76.3
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 5.3e-118 428.3 276 77.5
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 7.0e-118 427.9 291 73.2
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.2e-117 427.2 327 68.8
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 2.7e-117 426.0 325 68.6
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.5e-117 425.6 290 74.1
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 3.5e-117 425.6 276 77.9
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.5e-117 425.6 278 75.9
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.5e-117 425.2 334 66.2
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 4.5e-117 425.2 302 70.5
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.5e-117 425.2 277 76.2
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.9e-117 424.9 277 75.8
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.3e-116 423.7 277 76.5
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.7e-116 423.3 277 75.5
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 2.2e-116 422.9 302 70.5
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 2.2e-116 422.9 334 66.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.9e-116 422.5 277 76.2
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 6.5e-116 421.4 275 76.7
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 6.5e-116 421.4 331 66.8
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.1e-115 420.6 277 76.2
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.5e-115 420.2 296 72.0
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.5e-115 419.5 278 75.2
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 4.2e-115 418.7 334 67.1
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.6e-114 416.8 337 67.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.1e-114 416.4 352 64.8
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 4.7e-114 415.2 277 74.4
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 4.7e-114 415.2 293 71.7
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.0e-113 414.1 277 74.7
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.4e-113 413.7 336 64.9
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 2.0e-112 409.8 293 71.3
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 2.6e-112 409.5 292 71.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 4.4e-112 408.7 279 73.5
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 7.5e-112 407.9 330 65.5
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.5e-112 407.9 341 63.9
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.3e-111 407.1 323 66.3
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.2e-111 406.4 352 63.1
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 4.8e-111 405.2 277 73.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 8.3e-111 404.4 276 72.5
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.6e-109 400.2 302 69.5
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.7e-108 396.7 280 71.4
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.5e-107 393.7 277 70.8
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.6e-106 389.0 310 68.1
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.0e-105 387.5 278 73.7
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 1.8e-105 386.7 255 75.3
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 2.6e-104 382.9 317 63.7
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.4e-104 382.5 276 72.8
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 5.7e-104 381.7 251 76.1
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 9.8e-104 380.9 333 65.2
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 8.3e-103 377.9 283 69.6
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.5e-99 366.3 252 73.4
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.8e-97 360.1 276 70.3
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 5.8e-96 355.1 337 58.2
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 4.9e-95 352.1 279 66.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 7.0e-94 348.2 277 69.3
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 7.8e-93 344.7 281 66.2
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 8.3e-87 324.7 287 63.1
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 3.2e-86 322.8 313 57.5
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 7.0e-86 321.6 229 72.9
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.0e-85 318.5 279 64.5
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.8e-85 318.2 288 59.7
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.0e-84 317.8 288 59.7
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.0e-84 317.8 288 59.4
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 3.9e-84 315.8 198 80.8
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 3.3e-83 312.8 278 57.2
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 2.3e-81 306.6 242 69.4
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.4e-78 297.4 300 51.7
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.9e-78 297.0 198 73.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.6e-77 293.9 273 56.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.9e-76 289.3 275 56.0
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.5e-75 286.6 275 55.6
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.4e-72 276.2 261 59.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.4e-71 271.6 275 54.5
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 1.3e-63 247.7 208 64.9
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.9e-63 246.5 163 76.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.8e-58 229.9 198 60.1
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.6e-58 229.6 316 46.2
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.1e-57 228.0 156 73.1
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.3e-44 183.7 132 70.5
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 3.0e-44 183.3 145 67.6
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 2.1e-42 177.2 114 78.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 6.5e-39 165.6 186 53.2
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 6.7e-36 155.6 186 51.1
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.9e-35 154.1 188 48.4
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 2.4e-33 147.1 240 35.8
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 4.1e-33 146.4 225 44.9
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-32 144.4 212 43.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 2.6e-32 143.7 214 44.4
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.9e-30 137.5 104 71.2
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 8.8e-28 128.6 261 33.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-27 127.9 212 43.4
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 7.4e-27 125.6 79 84.8
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.7e-26 124.4 243 33.3
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 6.3e-26 122.5 137 53.3
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 8.2e-26 122.1 71 81.7
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 3.2e-22 110.2 79 68.4
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 7.9e-21 105.5 90 58.9
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-20 104.0 69 72.5
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.3e-19 100.1 60 80.0
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 7.4e-19 99.0 71 66.2
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 2.4e-17 94.0 151 40.4
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 5.9e-16 89.4 128 41.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 2.9e-15 87.0 65 70.8
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 6.1e-13 79.3 78 56.4
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 6.1e-13 79.3 61 67.2
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 8.2e-10 68.9 57 63.2
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 4.1e-09 66.6 39 74.4
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.2e-08 65.1 49 65.3
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 7.7e-08 62.4 35 80.0
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 7.2e-06 55.8 92 39.1


User provided reference genes

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