Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 0.0e+00 1305.8 657 100.0
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 0.0e+00 1267.3 657 97.3
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 0.0e+00 1197.6 657 92.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.0e-238 829.3 682 67.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.8e-201 704.9 664 61.0
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.8e-192 675.6 646 61.0
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.7e-99 366.7 445 46.7
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 6.0e-97 359.4 704 37.9
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.8e-94 350.5 690 36.5
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 8.3e-91 339.0 686 36.4
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.1e-77 295.4 724 33.8
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 5.2e-77 293.1 701 34.8
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.2e-76 292.0 706 32.4
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 3.5e-73 280.4 735 33.5
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.0e-72 278.9 724 32.6
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 9.6e-71 272.3 709 34.4
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.8e-70 270.8 241 58.5
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 3.6e-70 270.4 338 46.7
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.0e-69 266.9 769 31.7
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.7e-67 261.5 739 32.2
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.7e-67 261.5 722 31.9
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.1e-66 258.8 390 41.3
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.7e-65 254.2 750 29.7
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.3e-64 251.9 730 31.1
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 6.7e-64 249.6 729 29.5
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.5e-63 248.4 422 41.7
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.4e-61 241.9 729 30.0
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.8e-61 241.5 468 35.7
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.1e-61 240.7 745 29.1
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 5.3e-61 240.0 710 31.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.5e-60 236.9 737 30.9
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 7.6e-60 236.1 447 35.6
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-59 235.3 442 36.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 9.3e-58 229.2 474 36.1
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 9.3e-58 229.2 246 52.8
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.6e-57 228.4 444 36.0
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 6.0e-57 226.5 444 35.8
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.0e-56 225.7 530 32.8
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.8e-56 224.9 526 34.4
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.1e-54 218.0 585 31.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.8e-54 217.6 569 30.8
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 6.2e-54 216.5 406 36.5
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 9.0e-53 212.6 713 29.9
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.2e-52 212.2 488 35.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.2e-52 212.2 735 30.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 1.5e-52 211.8 481 32.8
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 3.4e-52 210.7 243 51.0
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 8.4e-51 206.1 732 30.7
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.9e-50 204.9 673 30.5
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 7.1e-50 203.0 419 35.8
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.1e-49 201.4 699 28.3
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.7e-49 201.1 733 27.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 3.5e-49 200.7 686 27.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 5.1e-48 196.8 409 34.0
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 6.7e-48 196.4 409 35.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 2.5e-47 194.5 583 31.9
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 2.5e-47 194.5 409 34.5
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.5e-47 194.5 693 29.6
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 4.3e-47 193.7 738 27.0
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 4.3e-47 193.7 704 26.8
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.4e-45 188.7 511 30.9
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 6.5e-43 179.9 464 33.8
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.4e-42 178.7 716 30.0
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.9e-42 178.3 733 27.1
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.9e-42 178.3 489 31.1
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 7.2e-42 176.4 408 34.1
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.3e-40 171.4 714 29.7
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.1e-39 169.1 695 28.3
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 2.0e-39 168.3 407 33.2
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 5.7e-39 166.8 666 27.9
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.7e-39 166.8 424 32.3
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 7.4e-39 166.4 711 29.4
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.8e-38 164.5 476 31.7
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 4.8e-38 163.7 433 31.9
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 5.9e-36 156.8 519 30.1
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 5.9e-36 156.8 399 34.1
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.0e-35 156.0 750 25.6
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.0e-35 156.0 408 29.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 5.0e-35 153.7 434 30.4
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.9e-34 151.8 514 30.5
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 2.5e-34 151.4 308 36.0
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 3.2e-34 151.0 390 32.6
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 9.4e-34 149.4 704 27.1
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.7e-33 147.9 310 37.1
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 4.7e-33 147.1 763 25.7
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.0e-32 146.0 310 35.5
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.4e-32 145.6 696 26.6
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 3.0e-32 144.4 759 25.2
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 3.9e-32 144.1 310 35.2
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 9.1e-29 132.9 104 61.5
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 6.5e-27 126.7 670 26.0
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 8.5e-27 126.3 211 41.2
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 1.4e-24 119.0 444 27.7
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 3.9e-24 117.5 473 26.8
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 9.7e-23 112.8 219 36.1
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.7e-22 112.1 250 32.4
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.2e-22 111.7 477 26.2
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 9.1e-21 106.3 370 28.4
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.1e-18 99.4 521 25.1
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.1e-17 95.1 406 26.4
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 8.0e-17 93.2 355 30.1
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 2.0e-15 88.6 402 25.4
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 3.3e-15 87.8 655 22.3
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.4e-15 87.4 344 27.9
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 7.5e-15 86.7 459 26.8
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 7.5e-15 86.7 174 33.3
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 1.3e-14 85.9 353 27.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.8e-14 84.7 214 30.8
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 4.8e-14 84.0 369 29.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.8e-14 84.0 295 29.5
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.8e-14 84.0 295 29.5
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.8e-14 84.0 295 29.5
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 6.3e-14 83.6 303 29.7
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-13 82.8 317 29.3
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.1e-13 82.8 317 29.3
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.8e-13 82.0 213 34.7
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 7.0e-13 80.1 288 29.2
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 7.0e-13 80.1 288 29.2
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 9.1e-13 79.7 316 29.1
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-12 79.3 433 25.2
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.6e-12 79.0 326 27.9
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 4.5e-12 77.4 328 27.7
Nitab4.5_0007728g0030 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.7e-11 75.5 101 40.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 7.2e-10 70.1 51 62.7
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.0e-07 62.0 204 28.9
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 4.4e-07 60.8 388 26.5
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.3e-06 59.3 290 23.4
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 8.3e-06 56.6 286 25.5


User provided reference genes

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