Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.8e-109 399.4 230 100.0
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.8e-109 399.4 230 100.0
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.8e-109 399.4 230 100.0
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.9e-106 389.4 230 97.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.5e-106 389.0 230 97.8
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-104 383.6 230 97.4
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.5e-103 379.8 230 97.0
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 5.7e-103 377.9 230 96.5
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.7e-102 375.2 230 96.1
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 4.8e-102 374.8 233 95.3
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.1e-98 363.6 230 92.6
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.4e-98 363.2 230 93.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.1e-97 359.4 230 93.0
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 2.3e-96 355.9 230 91.7
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.0e-96 355.5 212 97.2
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.1e-95 353.6 230 90.0
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.5e-95 353.2 229 90.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 4.4e-95 351.7 230 89.6
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 4.4e-95 351.7 230 90.0
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 5.7e-95 351.3 230 90.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.7e-95 351.3 230 90.4
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.7e-95 351.3 230 90.4
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.7e-94 349.7 230 90.0
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.7e-94 348.6 230 90.9
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 6.3e-94 347.8 230 89.6
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 6.3e-94 347.8 227 90.3
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 8.2e-94 347.4 230 89.6
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 8.2e-94 347.4 230 89.6
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.4e-93 345.9 229 89.5
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 7.0e-93 344.4 233 90.1
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.5e-92 343.2 230 90.0
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 3.5e-92 342.0 230 87.8
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.2e-91 339.3 230 87.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 3.8e-91 338.6 230 85.7
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-90 336.7 230 89.1
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 2.5e-90 335.9 196 99.0
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.5e-90 335.9 230 87.0
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-90 335.9 230 87.4
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.5e-90 335.9 230 87.4
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.5e-90 335.9 230 87.4
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 4.2e-90 335.1 270 78.1
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.2e-90 334.3 230 87.0
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 9.4e-90 334.0 230 88.3
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 88.3
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 2.1e-89 332.8 230 87.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.7e-89 332.4 230 88.7
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 2.7e-89 332.4 230 87.4
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 2.7e-89 332.4 230 88.3
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 3.6e-89 332.0 230 87.8
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 3.6e-89 332.0 230 87.0
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 8.0e-89 330.9 230 87.4
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 8.0e-89 330.9 230 87.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.4e-88 330.1 230 86.5
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.8e-88 329.7 230 87.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 2.3e-88 329.3 230 86.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.3e-88 329.3 230 86.5
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 3.0e-88 328.9 230 87.4
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 6.7e-88 327.8 230 86.5
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 8.8e-88 327.4 229 86.9
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 86.5
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 86.5
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 85.7
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 85.7
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.5e-87 326.6 230 86.5
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.5e-87 326.6 230 85.2
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 2.6e-87 325.9 230 86.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 4.4e-87 325.1 229 87.3
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-87 325.1 230 85.2
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 4.4e-87 325.1 229 85.6
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 9.7e-87 323.9 237 84.4
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 9.7e-87 323.9 232 85.8
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.7e-86 323.2 230 84.3
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.2e-86 322.8 230 84.8
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.2e-86 322.8 233 84.1
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 2.8e-86 322.4 231 84.8
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 3.7e-86 322.0 230 85.7
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.7e-86 322.0 228 85.5
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.7e-86 322.0 230 84.8
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 4.8e-86 321.6 230 83.9
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 4.8e-86 321.6 230 85.7
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.5
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.5
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.9
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.9
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.9
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.1e-85 320.5 232 84.9
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.4e-85 320.1 229 86.5
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.8e-85 319.7 230 83.9
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.8e-85 319.7 230 83.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.8e-85 319.7 230 85.7
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.4e-85 319.3 227 85.5
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 3.1e-85 318.9 230 83.0
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 3.1e-85 318.9 230 83.0
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 3.1e-85 318.9 230 83.0
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 3.1e-85 318.9 230 83.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 3.1e-85 318.9 230 83.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 4.1e-85 318.5 230 83.9
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 4.1e-85 318.5 230 84.8
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 5.3e-85 318.2 230 82.6
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 5.3e-85 318.2 230 82.6
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 5.3e-85 318.2 230 83.5
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 5.3e-85 318.2 198 93.4
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 7.0e-85 317.8 230 83.0
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 7.0e-85 317.8 230 83.0
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 7.0e-85 317.8 230 82.6
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.0e-85 317.8 230 83.0
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.0e-85 317.8 232 84.5
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 9.1e-85 317.4 232 83.6
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.1e-85 317.4 232 84.5
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.2e-84 317.0 230 82.6
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.2e-84 317.0 230 83.5
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.0e-84 316.2 230 83.0
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 230 83.5
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.5e-84 315.5 230 83.5
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 4.5e-84 315.1 230 81.7
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 5.9e-84 314.7 230 82.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.3e-83 313.5 230 83.0
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.9e-82 309.7 232 82.3
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.2e-82 308.9 230 82.2
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 4.7e-81 305.1 288 62.2
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 4.0e-80 302.0 232 79.7
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 5.2e-80 301.6 230 80.4
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 6.7e-80 301.2 189 94.2
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.8e-80 300.8 184 96.7
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.0e-79 299.7 212 84.9
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.3e-78 297.0 185 93.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.2e-78 296.2 210 85.2
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.8e-78 295.8 185 92.4
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.1e-77 293.9 179 95.5
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 2.5e-74 282.7 198 87.4
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 5.5e-74 281.6 236 76.3
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 9.4e-74 280.8 198 86.9
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 2.7e-73 279.3 185 88.1
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 3.6e-73 278.9 168 97.0
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 4.4e-71 271.9 230 71.7
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 7.5e-71 271.2 185 88.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.4e-69 266.9 211 77.7
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.8e-69 266.5 198 85.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.8e-69 266.5 187 84.5
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 2.5e-66 256.1 231 70.1
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 4.2e-66 255.4 169 88.8
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 4.7e-65 251.9 164 90.2
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.4e-63 245.7 180 81.7
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.2e-62 243.0 227 63.4
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.4e-61 239.6 148 97.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.6e-60 236.9 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 2.3e-59 233.0 225 68.0
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.7e-57 225.3 178 70.8
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 8.0e-57 224.6 227 63.4
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.8e-56 223.4 178 78.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 5.2e-56 221.9 137 97.1
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 9.8e-55 217.6 160 71.9
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.7e-52 209.5 185 69.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.5e-52 209.1 245 55.9
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-50 204.1 132 95.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.5e-50 203.0 153 81.7
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.4e-48 197.2 162 75.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.1e-45 187.6 119 80.7
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.4e-45 187.2 141 71.6
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 3.9e-43 179.1 156 64.1
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 2.8e-33 146.4 123 64.2
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 6.2e-33 145.2 127 62.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.2e-32 142.1 230 44.8
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.8e-25 119.8 212 41.5
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-18 97.4 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.5e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.6e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.5e-07 60.8 109 44.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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