Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.9e-259 898.7 460 100.0
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 2.4e-217 758.8 409 95.8
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 9.6e-211 736.9 465 83.9
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 9.8e-163 577.4 486 67.3
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-126 457.6 574 49.7
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 9.5e-126 454.5 560 50.9
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 8.1e-125 451.4 564 50.2
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.6e-123 446.4 564 49.6
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 5.4e-121 438.7 561 48.5
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 3.0e-119 433.0 532 48.5
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.1e-119 432.2 573 48.0
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.9e-116 421.8 517 53.2
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 9.3e-113 411.4 510 50.2
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.0e-112 408.7 507 52.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 7.8e-112 408.3 534 48.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.0e-111 407.9 511 48.9
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.3e-111 406.8 534 47.4
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 5.1e-111 405.6 507 48.7
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 3.3e-110 402.9 534 47.4
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.3e-110 402.9 526 48.5
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 4.3e-110 402.5 509 48.1
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 2.1e-109 400.2 466 49.8
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 6.2e-109 398.7 453 50.3
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.1e-108 397.9 498 49.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.4e-108 397.5 537 46.7
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.8e-108 397.1 525 46.7
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.4e-108 396.7 511 47.4
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 3.1e-108 396.4 524 45.8
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 5.3e-108 395.6 519 47.2
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.3e-108 395.6 526 45.8
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 9.0e-108 394.8 450 50.7
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 9.0e-108 394.8 450 50.7
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.2e-107 394.4 546 45.8
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.0e-107 393.7 543 46.4
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.0e-107 393.7 543 44.2
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 2.0e-107 393.7 453 49.9
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 3.4e-107 392.9 443 51.7
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 4.5e-107 392.5 541 44.9
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 5.8e-107 392.1 523 45.1
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.3e-106 391.0 530 44.9
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.7e-106 390.6 469 48.0
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 2.9e-106 389.8 501 47.5
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 4.9e-106 389.0 515 46.6
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 6.4e-106 388.7 529 44.6
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 8.4e-106 388.3 538 44.6
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 1.4e-105 387.5 453 50.1
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.9e-105 387.1 449 49.0
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 2.4e-105 386.7 451 49.2
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 7.1e-105 385.2 450 50.4
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 7.1e-105 385.2 523 44.4
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.2e-104 384.4 503 47.1
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.6e-104 384.0 550 44.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 2.1e-104 383.6 441 50.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 2.1e-104 383.6 469 47.3
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 2.1e-104 383.6 453 48.1
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 3.5e-104 382.9 453 48.3
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 7.9e-104 381.7 514 45.1
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.0e-103 381.3 453 49.2
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.3e-103 380.2 506 44.9
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 2.3e-103 380.2 501 46.1
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 3.0e-103 379.8 463 48.8
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.1e-102 377.9 504 46.4
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.5e-102 376.7 453 48.1
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 2.5e-102 376.7 456 49.1
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.3e-102 376.3 533 43.9
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 3.3e-102 376.3 448 48.7
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 5.6e-102 375.6 442 50.0
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 5.6e-102 375.6 520 45.4
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 7.4e-102 375.2 441 49.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 1.3e-101 374.4 498 46.6
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.3e-101 374.4 443 50.3
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.8e-101 373.2 507 45.8
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 4.8e-101 372.5 449 47.9
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 8.1e-101 371.7 515 45.0
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.1e-100 371.3 443 49.4
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.1e-100 371.3 449 47.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.8e-100 370.5 517 46.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.8e-100 370.5 460 48.3
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.4e-100 370.2 485 46.2
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 4.0e-100 369.4 445 48.3
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 5.3e-100 369.0 533 43.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 5.3e-100 369.0 531 44.3
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.3e-100 369.0 467 46.9
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 6.9e-100 368.6 448 48.7
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.5e-99 367.5 532 44.4
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.5e-99 367.5 443 49.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.5e-99 367.5 543 45.1
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.4e-99 366.3 504 45.0
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 3.4e-99 366.3 532 44.4
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.5e-99 365.9 448 48.4
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.7e-98 364.0 500 46.0
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.7e-98 364.0 487 46.6
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 4.9e-98 362.5 439 48.1
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 1.1e-97 361.3 439 49.2
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.9e-97 360.5 472 46.0
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 7.1e-97 358.6 448 48.2
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.6e-96 357.5 429 49.2
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 6.0e-96 355.5 503 45.7
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.9e-95 352.8 504 45.4
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.4e-94 348.6 467 45.2
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.4e-92 344.4 439 46.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 2.6e-91 340.1 602 38.5
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 7.9e-88 328.6 469 43.9
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.4e-84 317.0 373 49.3
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 2.2e-82 310.5 475 46.7
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.2e-81 306.6 320 54.7
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 6.1e-80 302.4 505 38.8
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.9e-79 299.7 257 61.9
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 8.2e-77 292.0 436 41.1
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.4e-71 274.6 385 46.0
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 5.7e-70 269.2 438 39.0
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 9.1e-68 261.9 451 39.2
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 5.0e-66 256.1 433 38.6
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.5e-57 228.0 457 33.9
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 5.2e-55 219.5 170 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 5.2e-47 193.0 286 39.9
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.2e-45 187.6 509 30.6
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 6.1e-40 169.5 484 28.5
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.1e-36 156.8 150 58.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 5.6e-25 119.8 103 59.2
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.6e-24 118.2 90 65.6
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.4e-23 115.2 478 26.2
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.7e-21 108.2 130 44.6
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.1e-16 91.3 83 56.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.1e-15 89.0 108 44.4
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.1e-15 89.0 110 40.9
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 9.9e-14 82.4 102 45.1
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.6e-10 69.7 58 58.6
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 7.3e-09 66.2 122 41.0
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.5e-09 65.9 122 41.8
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.2e-08 65.5 129 38.0


User provided reference genes

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