Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 9.1e-116 420.2 209 100.0
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 6.5e-106 387.5 196 98.5
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 2.2e-98 362.5 196 93.9
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 2.6e-86 322.4 202 82.2
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 5.7e-86 321.2 202 82.7
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 2.0e-83 312.8 200 82.5
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 4.1e-68 261.9 198 64.6
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 3.9e-66 255.4 195 65.6
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 5.0e-66 255.0 195 65.6
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 1.1e-65 253.8 194 64.9
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 1.5e-65 253.4 200 65.5
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 1.9e-65 253.1 170 69.4
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 7.3e-65 251.1 199 65.8
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 9.5e-65 250.8 198 62.1
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 1.1e-63 247.3 205 61.5
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 1.8e-63 246.5 164 69.5
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 2.3e-63 246.1 200 62.0
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 4.0e-63 245.4 194 61.9
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 6.8e-63 244.6 169 67.5
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 1.2e-62 243.8 200 64.0
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 2.0e-62 243.0 202 62.4
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 5.8e-62 241.5 196 63.3
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 1.3e-61 240.4 193 59.6
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 1.7e-61 240.0 171 66.1
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 2.2e-61 239.6 200 59.0
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 2.2e-61 239.6 171 66.1
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 2.2e-61 239.6 202 60.4
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 2.9e-61 239.2 201 60.2
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 2.9e-61 239.2 201 61.7
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 3.7e-61 238.8 213 60.6
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 3.7e-61 238.8 200 61.5
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 4.9e-61 238.4 195 61.0
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 6.4e-61 238.0 195 60.5
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 6.4e-61 238.0 174 67.2
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 8.3e-61 237.7 168 66.7
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 1.4e-60 236.9 161 68.3
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 1.9e-60 236.5 197 61.4
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 2.4e-60 236.1 185 64.9
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 5.4e-60 235.0 202 60.4
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 5.4e-60 235.0 197 61.4
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 9.2e-60 234.2 195 63.1
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 1.2e-59 233.8 196 61.7
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 2.1e-59 233.0 194 60.3
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 2.1e-59 233.0 195 60.0
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 2.1e-59 233.0 194 61.9
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 2.7e-59 232.6 196 61.2
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 2.7e-59 232.6 200 60.5
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 3.5e-59 232.3 204 61.3
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 4.6e-59 231.9 177 63.3
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 6.0e-59 231.5 173 64.2
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 1.7e-58 229.9 204 58.3
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 3.0e-58 229.2 202 59.9
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 5.1e-58 228.4 168 65.5
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 5.1e-58 228.4 178 62.4
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 5.1e-58 228.4 166 66.9
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 5.1e-58 228.4 167 64.1
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 8.6e-58 227.6 202 59.4
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 1.1e-57 227.3 187 58.8
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 1.9e-57 226.5 207 56.5
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 3.3e-57 225.7 194 62.4
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 5.6e-57 224.9 196 58.2
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 9.5e-57 224.2 157 66.9
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 9.5e-57 224.2 185 60.5
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 1.2e-56 223.8 219 53.9
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 2.1e-56 223.0 166 65.1
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 3.6e-56 222.2 165 64.8
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 4.7e-56 221.9 209 56.5
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 6.2e-56 221.5 176 62.5
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 1.1e-55 220.7 173 60.7
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.1e-55 220.7 157 67.5
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 1.4e-55 220.3 164 63.4
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.5e-54 216.9 198 56.1
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.5e-54 216.9 201 56.7
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 2.0e-54 216.5 229 53.3
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 2.0e-54 216.5 165 64.8
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 7.5e-54 214.5 172 59.3
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 2.2e-53 213.0 163 64.4
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 2.2e-53 213.0 163 64.4
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 2.2e-53 213.0 163 64.4
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 2.9e-53 212.6 225 52.0
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 4.9e-53 211.8 182 59.9
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 1.1e-52 210.7 135 69.6
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 2.4e-52 209.5 157 61.8
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 5.4e-52 208.4 173 59.5
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 7.1e-52 208.0 163 62.6
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 1.2e-51 207.2 163 62.6
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 1.6e-51 206.8 164 62.8
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 2.7e-51 206.1 162 63.6
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 3.5e-51 205.7 152 65.1
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 4.6e-51 205.3 155 65.2
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 4.6e-51 205.3 164 62.2
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 6.0e-51 204.9 177 60.5
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 2.3e-50 203.0 162 63.0
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 6.6e-50 201.4 200 50.5
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 1.9e-49 199.9 201 53.2
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 1.9e-49 199.9 203 52.2
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 1.9e-49 199.9 184 56.5
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 5.6e-49 198.4 201 52.7
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 1.1e-47 194.1 200 49.0
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 1.3e-45 187.2 185 55.1
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 2.2e-45 186.4 161 57.1
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 3.8e-45 185.7 162 54.9
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 9.6e-41 171.0 145 63.4
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 4.2e-36 155.6 162 49.4
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 5.4e-36 155.2 168 50.0
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 5.1e-34 148.7 217 41.9
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 7.3e-33 144.8 162 43.8
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 1.3e-32 144.1 161 44.7
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 1.6e-32 143.7 185 43.8
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 7.6e-30 134.8 165 43.6
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 8.4e-29 131.3 91 69.2
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 1.3e-26 124.0 67 85.1
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 1.3e-24 117.5 102 55.9
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 2.1e-24 116.7 96 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 4.5e-22 109.0 189 34.9
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 3.5e-19 99.4 168 31.5
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 4.6e-19 99.0 170 32.9
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 1.1e-17 94.4 136 37.5
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 5.8e-14 82.0 177 27.1
Pp3c5_28350 Physcomitrium patens HOM05D006662 ORTHO05D008378 1.0e-10 71.2 210 29.0
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 5.7e-09 65.5 98 37.8
Peaxi162Scf00405g00081 Petunia axillaris HOM05D006662 ORTHO05D008378 9.7e-09 64.7 65 52.3
Sabra04G0096800 Salix brachista HOM05D000546 ORTHO05D000398 1.5e-06 57.4 44 56.8


User provided reference genes

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