Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g108835.1 Solanum lycopersicum HOM05D000224 ORTHO05D000337 1.1e-78 296.6 146 100.0
Solyc01g108820.1 Solanum lycopersicum HOM05D000224 ORTHO05D000337 7.0e-22 107.8 91 69.2
PGSC0003DMG401025908 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.1e-22 107.5 91 65.9
PGSC0003DMG402025908 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.0e-21 106.3 89 67.4
PGSC0003DMG402025920 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.4e-21 105.5 92 65.2
PGSC0003DMG400025909 Solanum tuberosum HOM05D000224 ORTHO05D000337 5.0e-20 101.7 91 62.6
CAN.G322.58 Capsicum annuum HOM05D000224 ORTHO05D000337 2.5e-19 99.4 91 63.7
CAN.G322.67 Capsicum annuum HOM05D000224 ORTHO05D000337 5.5e-19 98.2 92 60.9
Solyc01g108750.2 Solanum lycopersicum HOM05D000224 ORTHO05D000337 9.4e-19 97.4 94 57.4
PGSC0003DMG400010729 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.4e-19 97.4 91 59.3
PGSC0003DMG400025917 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.4e-19 97.4 91 59.3
PGSC0003DMG400029180 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.4e-19 97.4 91 61.5
Sopen01g050950 Solanum pennellii HOM05D000224 ORTHO05D000337 1.2e-18 97.1 94 56.4
Sopen01g050970 Solanum pennellii HOM05D000224 ORTHO05D000337 6.1e-18 94.7 94 58.5
CAN.G322.56 Capsicum annuum HOM05D000224 ORTHO05D000337 2.3e-17 92.8 91 59.3
PGSC0003DMG400025918 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.3e-17 92.8 91 59.3
CAN.G322.49 Capsicum annuum HOM05D000224 ORTHO05D000337 6.7e-17 91.3 94 58.5
CAN.G322.63 Capsicum annuum HOM05D000224 ORTHO05D000337 6.7e-17 91.3 91 57.1
Nitab4.5_0003726g0100 Nicotiana tabacum HOM05D000224 ORTHO05D000337 6.7e-17 91.3 115 53.0
PGSC0003DMG400025911 Solanum tuberosum HOM05D000224 ORTHO05D000337 6.7e-17 91.3 91 58.2
PGSC0003DMG402025906 Solanum tuberosum HOM05D000224 ORTHO05D000337 6.7e-17 91.3 94 56.4
PGSC0003DMG400025907 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.1e-16 90.5 94 54.3
CAN.G363.30 Capsicum annuum HOM05D000224 ORTHO05D000337 1.5e-16 90.1 94 56.4
CAN.G322.57 Capsicum annuum HOM05D000224 ORTHO05D000337 2.0e-16 89.7 91 57.1
CAN.G322.54 Capsicum annuum HOM05D000224 ORTHO05D000337 2.6e-16 89.4 94 57.4
PGSC0003DMG400025905 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.3e-16 89.0 91 58.2
PGSC0003DMG400026617 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.3e-16 89.0 91 57.1
CAN.G322.51 Capsicum annuum HOM05D000224 ORTHO05D000337 4.4e-16 88.6 94 57.4
CAN.G680.5 Capsicum annuum HOM05D000224 ORTHO05D000337 4.4e-16 88.6 94 56.4
Solyc09g014970.4 Solanum lycopersicum HOM05D000224 ORTHO05D000337 5.7e-16 88.2 92 56.5
Nitab4.5_0001401g0130 Nicotiana tabacum HOM05D000224 ORTHO05D000337 9.7e-16 87.4 115 43.5
CAN.G322.47 Capsicum annuum HOM05D000224 ORTHO05D000337 1.7e-15 86.7 93 53.8
PGSC0003DMG400025912 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.7e-15 85.5 86 57.0
CAN.G322.52 Capsicum annuum HOM05D000224 ORTHO05D000337 4.8e-15 85.1 94 54.3
Sopen01g050940 Solanum pennellii HOM05D000224 ORTHO05D000337 2.4e-14 82.8 91 54.9
Sopen01g050960 Solanum pennellii HOM05D000224 ORTHO05D000337 2.4e-14 82.8 94 50.0
Nitab4.5_0001401g0090 Nicotiana tabacum HOM05D000224 ORTHO05D000337 3.1e-14 82.4 94 54.3
Solyc01g108810.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 3.1e-14 82.4 63 66.7
Sopen01g051010 Solanum pennellii HOM05D000224 ORTHO05D000337 4.1e-14 82.0 63 66.7
Solyc01g108740.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 7.0e-14 81.3 91 53.8
CAN.G322.46 Capsicum annuum HOM05D000224 ORTHO05D000337 1.2e-13 80.5 93 51.6
Sopen01g050980 Solanum pennellii HOM05D000224 ORTHO05D000337 1.6e-13 80.1 62 67.7
Peaxi162Scf00016g01420 Petunia axillaris HOM05D000224 ORTHO05D000337 2.0e-13 79.7 94 52.1
CAN.G322.55 Capsicum annuum HOM05D000224 ORTHO05D000337 5.9e-13 78.2 76 56.6
Solyc01g108780.4 Solanum lycopersicum HOM05D000224 ORTHO05D000337 5.9e-13 78.2 62 66.1
Sopen07g028790 Solanum pennellii HOM05D000224 ORTHO05D000337 7.7e-13 77.8 65 64.6
CAN.G322.62 Capsicum annuum HOM05D000224 ORTHO05D000337 1.3e-12 77.0 62 64.5
PGSC0003DMG401005446 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.3e-12 77.0 67 61.2
PGSC0003DMG400005450 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.2e-12 76.3 63 65.1
PGSC0003DMG400010730 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.2e-12 76.3 63 65.1
CAN.G322.48 Capsicum annuum HOM05D000224 ORTHO05D000337 3.8e-12 75.5 92 52.2
CAN.G322.53 Capsicum annuum HOM05D000224 ORTHO05D000337 3.8e-12 75.5 76 55.3
Sopen01g050930 Solanum pennellii HOM05D000224 ORTHO05D000337 3.8e-12 75.5 91 51.6
PGSC0003DMG400025910 Solanum tuberosum HOM05D000224 ORTHO05D000337 6.5e-12 74.7 63 58.7
PGSC0003DMG400025916 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.4e-11 70.9 63 58.7
PGSC0003DMG400025825 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.2e-10 70.5 63 60.3
Peaxi162Scf00003g01942 Petunia axillaris HOM05D000224 ORTHO05D000337 2.1e-10 69.7 98 40.8
Sopen01g051020 Solanum pennellii HOM05D000224 ORTHO05D000337 2.7e-10 69.3 63 54.0
Peaxi162Scf00016g01421 Petunia axillaris HOM05D000224 ORTHO05D000337 4.7e-10 68.6 78 56.4
CAN.G322.44 Capsicum annuum HOM05D000224 ORTHO05D000337 8.0e-10 67.8 61 57.4
Solyc01g108680.4 Solanum lycopersicum HOM05D000224 ORTHO05D000337 8.0e-10 67.8 62 58.1
PGSC0003DMG401025906 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.4e-09 67.0 63 50.8
Nitab4.5_0012282g0020 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.8e-09 66.6 80 52.5
CAN.G322.45 Capsicum annuum HOM05D000224 ORTHO05D000337 2.3e-09 66.2 86 46.5
CAN.G322.66 Capsicum annuum HOM05D000224 ORTHO05D000337 6.7e-09 64.7 63 54.0
Sopen01g050900 Solanum pennellii HOM05D000224 ORTHO05D000337 1.2e-08 63.9 62 58.1
Manes.13G129600 Manihot esculenta HOM05D000224 ORTHO05D000337 1.5e-08 63.5 63 54.0
PGSC0003DMG400025919 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.5e-08 63.5 33 87.9
FvH4_1g14900 Fragaria vesca HOM05D000224 ORTHO05D000337 4.4e-08 62.0 65 47.7
FvH4_1g15260 Fragaria vesca HOM05D000224 ORTHO05D000337 4.4e-08 62.0 63 50.8
FAN19G2185 Fragaria x ananassa HOM05D000224 ORTHO05D000337 4.4e-08 62.0 63 50.8
Oeu007250.1 Olea europaea HOM05D000224 ORTHO05D000337 5.7e-08 61.6 80 42.5
FvH4_1g14940 Fragaria vesca HOM05D000224 ORTHO05D000337 7.5e-08 61.2 72 47.2
FAN28G1496 Fragaria x ananassa HOM05D000224 ORTHO05D000337 7.5e-08 61.2 59 50.8
Prupe.8G115000 Prunus persica HOM05D000224 ORTHO05D000337 7.5e-08 61.2 90 38.9
RcHm_v2.0_Chr2g0103821 Rosa chinensis HOM05D000224 ORTHO05D000337 7.5e-08 61.2 93 40.9
Nitab4.5_0009440g0030 Nicotiana tabacum HOM05D000224 ORTHO05D000337 9.7e-08 60.8 94 39.4
RcHm_v2.0_Chr2g0104521 Rosa chinensis HOM05D000224 ORTHO05D000337 9.7e-08 60.8 63 50.8
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.7e-07 60.1 101 40.6
CAN.G837.1 Capsicum annuum HOM05D000224 ORTHO05D002219 2.2e-07 59.7 61 54.1
Gohir.D11G195800 Gossypium hirsutum HOM05D000224 ORTHO05D000337 2.2e-07 59.7 62 48.4
Gorai.007G209600 Gossypium raimondii HOM05D000224 ORTHO05D000337 2.2e-07 59.7 62 48.4
RcHm_v2.0_Chr6g0259431 Rosa chinensis HOM05D000224 ORTHO05D000337 2.2e-07 59.7 91 39.6
FAN26G1696 Fragaria x ananassa HOM05D000224 ORTHO05D000337 2.8e-07 59.3 59 49.2
Atru.chr3.443 Acer truncatum HOM05D000224 ORTHO05D000337 3.7e-07 58.9 64 48.4
Cc02_g18340 Coffea canephora HOM05D000224 ORTHO05D000337 3.7e-07 58.9 94 39.4
FAN26G1077 Fragaria x ananassa HOM05D000224 ORTHO05D000337 3.7e-07 58.9 91 40.7
FAN28G2533 Fragaria x ananassa HOM05D000224 ORTHO05D000337 3.7e-07 58.9 91 40.7
Prupe.7G141400 Prunus persica HOM05D000224 ORTHO05D000337 3.7e-07 58.9 82 42.7
Duzib187G0950 Durio zibethinus HOM05D000224 ORTHO05D000337 4.8e-07 58.5 62 50.0
FvH4_1g14930 Fragaria vesca HOM05D000224 ORTHO05D000337 4.8e-07 58.5 91 40.7
FAN26G1497 Fragaria x ananassa HOM05D000224 ORTHO05D000337 4.8e-07 58.5 119 35.3
Lj1A706G22 Lonicera japonica HOM05D000224 ORTHO05D000337 4.8e-07 58.5 60 53.3
Manes.13G129500 Manihot esculenta HOM05D000224 ORTHO05D000337 4.8e-07 58.5 63 49.2
Potri.007G036800 Populus trichocarpa HOM05D000224 ORTHO05D000337 4.8e-07 58.5 67 43.3
RcHm_v2.0_Chr2g0103951 Rosa chinensis HOM05D000224 ORTHO05D000337 4.8e-07 58.5 59 50.8
COL.COLO4_11340 Corchorus olitorius HOM05D000224 ORTHO05D000337 6.3e-07 58.2 62 53.2
FAN19G0021 Fragaria x ananassa HOM05D000224 ORTHO05D000337 6.3e-07 58.2 63 49.2
FAN19G2536 Fragaria x ananassa HOM05D000224 ORTHO05D000337 6.3e-07 58.2 63 49.2
FAN26G0244 Fragaria x ananassa HOM05D000224 ORTHO05D000337 6.3e-07 58.2 63 49.2
Lj1A696T9 Lonicera japonica HOM05D000224 ORTHO05D000337 6.3e-07 58.2 62 50.0
Lj1C695T1 Lonicera japonica HOM05D000224 ORTHO05D000337 6.3e-07 58.2 62 50.0
Lj1C699T1 Lonicera japonica HOM05D000224 ORTHO05D000337 6.3e-07 58.2 62 50.0
Lj1C704G2 Lonicera japonica HOM05D000224 ORTHO05D000337 6.3e-07 58.2 62 51.6
Prupe.7G141300 Prunus persica HOM05D000224 ORTHO05D000337 6.3e-07 58.2 82 42.7
Sabra07G0033700 Salix brachista HOM05D000224 ORTHO05D000337 6.3e-07 58.2 66 43.9
RcHm_v2.0_Chr1g0329911 Rosa chinensis HOM05D000224 ORTHO05D000337 8.2e-07 57.8 92 38.0
RcHm_v2.0_Chr2g0103851 Rosa chinensis HOM05D000224 ORTHO05D000337 8.2e-07 57.8 69 44.9
FAN23G0377 Fragaria x ananassa HOM05D000224 ORTHO05D000337 1.1e-06 57.4 63 47.6
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.1e-06 57.4 63 47.6
FAN28G2521 Fragaria x ananassa HOM05D000224 ORTHO05D000337 1.1e-06 57.4 63 47.6
Lj1C708T3 Lonicera japonica HOM05D000224 ORTHO05D000337 1.1e-06 57.4 60 51.7
PSO541G0490 Papaver somniferum HOM05D000224 ORTHO05D000337 1.1e-06 57.4 64 43.8
Prupe.8G114700 Prunus persica HOM05D000224 ORTHO05D000337 1.1e-06 57.4 63 46.0
QL06p043506 Quercus lobata HOM05D000224 ORTHO05D000337 1.1e-06 57.4 62 50.0
QL06p043548 Quercus lobata HOM05D000224 ORTHO05D000337 1.1e-06 57.4 62 50.0
QL06p043682 Quercus lobata HOM05D000224 ORTHO05D000337 1.1e-06 57.4 62 50.0
Hund00313 Selenicereus undatus HOM05D000224 ORTHO05D000337 1.1e-06 57.4 94 40.4
TWI53G1898 Tripterygium wilfordii HOM05D000224 ORTHO05D000337 1.1e-06 57.4 65 49.2
vmacro17906 Vaccinium macrocarpon HOM05D000224 ORTHO05D000337 1.1e-06 57.4 67 43.3
Lj1A705T24 Lonicera japonica HOM05D000224 ORTHO05D000337 1.4e-06 57.0 60 51.7
Lj8A490G27 Lonicera japonica HOM05D000224 ORTHO05D000337 1.4e-06 57.0 66 45.5
MD02G1162800 Malus domestica HOM05D000224 ORTHO05D000337 1.4e-06 57.0 60 48.3
RcHm_v2.0_Chr2g0103841 Rosa chinensis HOM05D000224 ORTHO05D000337 1.4e-06 57.0 62 48.4
RcHm_v2.0_Chr2g0104001 Rosa chinensis HOM05D000224 ORTHO05D000337 1.4e-06 57.0 63 50.8
TAR628G0323 Trochodendron aralioides HOM05D000224 ORTHO05D000337 1.4e-06 57.0 63 52.4
Atru.chr3.441 Acer truncatum HOM05D000224 ORTHO05D000337 1.8e-06 56.6 63 47.6
arahy.Tifrunner.gnm1.ann1.LP72HD Arachis hypogaea HOM05D000224 ORTHO05D000337 1.8e-06 56.6 69 44.9
CiPaw.01G026200 Carya illinoinensis HOM05D000224 ORTHO05D000337 1.8e-06 56.6 66 43.9
FAN28G0906 Fragaria x ananassa HOM05D000224 ORTHO05D000337 1.8e-06 56.6 70 45.7
Gohir.A12G026600 Gossypium hirsutum HOM05D000224 ORTHO05D000337 1.8e-06 56.6 86 40.7
Gohir.D12G026200 Gossypium hirsutum HOM05D000224 ORTHO05D000337 1.8e-06 56.6 86 40.7
Lsat_1_v5_gn_2_86940 Lactuca sativa HOM05D000224 ORTHO05D000337 1.8e-06 56.6 67 43.3
PSO675G0539 Papaver somniferum HOM05D000224 ORTHO05D000337 1.8e-06 56.6 64 42.2
Prupe.7G141700 Prunus persica HOM05D000224 ORTHO05D000337 1.8e-06 56.6 62 48.4
QL06p043752 Quercus lobata HOM05D000224 ORTHO05D000337 1.8e-06 56.6 62 48.4
FAN27G3334 Fragaria x ananassa HOM05D000224 ORTHO05D000337 2.4e-06 56.2 81 39.5
Gohir.A12G026700 Gossypium hirsutum HOM05D000224 ORTHO05D000337 2.4e-06 56.2 86 40.7
Hma1.2p1_0546F.1_g176270 Hydrangea macrophylla HOM05D000224 ORTHO05D000337 2.4e-06 56.2 65 44.6
Lj1C704G0 Lonicera japonica HOM05D000224 ORTHO05D000337 2.4e-06 56.2 62 48.4
Lj7A43G13 Lonicera japonica HOM05D000224 ORTHO05D000337 2.4e-06 56.2 66 43.9
Lj8A496T25 Lonicera japonica HOM05D000224 ORTHO05D000337 2.4e-06 56.2 66 45.5
Lju2878A0G6 Lonicera japonica HOM05D000224 ORTHO05D000337 2.4e-06 56.2 62 48.4
Thecc.01G049500 Theobroma cacao HOM05D000224 ORTHO05D000337 2.4e-06 56.2 61 49.2
Actinidia00467 Actinidia chinensis HOM05D000224 ORTHO05D000337 3.1e-06 55.8 90 40.0
Haze_15197 Corylus avellana HOM05D000224 ORTHO05D000337 3.1e-06 55.8 61 49.2
FAN24G1272 Fragaria x ananassa HOM05D000224 ORTHO05D000337 3.1e-06 55.8 91 35.2
Lj1A694T10 Lonicera japonica HOM05D000224 ORTHO05D000337 3.1e-06 55.8 65 46.2
Lj9C362T7 Lonicera japonica HOM05D000224 ORTHO05D000337 3.1e-06 55.8 86 37.2
MD02G1161800 Malus domestica HOM05D000224 ORTHO05D000337 3.1e-06 55.8 67 46.3
MD03G1273700 Malus domestica HOM05D000224 ORTHO05D000337 3.1e-06 55.8 61 45.9
MD05G1074300 Malus domestica HOM05D000224 ORTHO05D000337 3.1e-06 55.8 94 39.4
QL06p043705 Quercus lobata HOM05D000224 ORTHO05D000337 3.1e-06 55.8 62 48.4
QL11p038676 Quercus lobata HOM05D000224 ORTHO05D000337 3.1e-06 55.8 92 39.1
Rhsim08G0108200 Rhododendron simsii HOM05D000224 ORTHO05D000337 3.1e-06 55.8 70 42.9
arahy.Tifrunner.gnm1.ann1.8T4BD4 Arachis hypogaea HOM05D000224 ORTHO05D000337 4.1e-06 55.5 62 48.4
CSS0020526 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D000337 4.1e-06 55.5 88 39.8
CiPaw.01G026100 Carya illinoinensis HOM05D000224 ORTHO05D000337 4.1e-06 55.5 66 42.4
Duzib147G0800 Durio zibethinus HOM05D000224 ORTHO05D000337 4.1e-06 55.5 62 48.4
Gorai.008G026500 Gossypium raimondii HOM05D000224 ORTHO05D000337 4.1e-06 55.5 86 39.5
Lj5A205G71 Lonicera japonica HOM05D000224 ORTHO05D000337 4.1e-06 55.5 64 45.3
Lj7A44T17 Lonicera japonica HOM05D000224 ORTHO05D000337 4.1e-06 55.5 66 43.9
Medtr8g008505 Medicago truncatula HOM05D000224 ORTHO05D000337 4.1e-06 55.5 87 35.6
Rhsim08G0106200 Rhododendron simsii HOM05D000224 ORTHO05D000337 4.1e-06 55.5 70 42.9
CiPaw.01G026400 Carya illinoinensis HOM05D000224 ORTHO05D000337 5.3e-06 55.1 66 43.9
FvH4_1g14950 Fragaria vesca HOM05D000224 ORTHO05D000337 5.3e-06 55.1 63 47.6
MD02G1162200 Malus domestica HOM05D000224 ORTHO05D000337 5.3e-06 55.1 60 46.7
QL11p038700 Quercus lobata HOM05D000224 ORTHO05D000337 5.3e-06 55.1 92 39.1
Thecc.01G048500 Theobroma cacao HOM05D000224 ORTHO05D000337 5.3e-06 55.1 63 42.9
Lj1C703G0 Lonicera japonica HOM05D000224 ORTHO05D000337 7.0e-06 54.7 62 46.8
Lju3020A0G15 Lonicera japonica HOM05D000224 ORTHO05D000337 7.0e-06 54.7 64 46.9
Lj1g0006742 Lotus japonicus HOM05D000224 ORTHO05D000337 7.0e-06 54.7 80 37.5
MD05G1074200 Malus domestica HOM05D000018 ORTHO05D001172 7.0e-06 54.7 61 45.9
Oeu009815.1 Olea europaea HOM05D000224 ORTHO05D000337 7.0e-06 54.7 64 45.3
CSS0035757 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D000337 9.1e-06 54.3 62 45.2
Duzib264G0393 Durio zibethinus HOM05D000224 ORTHO05D000337 9.1e-06 54.3 62 46.8
Lj1C705T1 Lonicera japonica HOM05D000224 ORTHO05D000337 9.1e-06 54.3 63 46.0
Lj3g0027068 Lotus japonicus HOM05D000224 ORTHO05D000337 9.1e-06 54.3 87 37.9
Prupe.7G141500 Prunus persica HOM05D000224 ORTHO05D000337 9.1e-06 54.3 62 46.8
QL06p043416 Quercus lobata HOM05D000224 ORTHO05D000337 9.1e-06 54.3 61 50.8
QL06p043438 Quercus lobata HOM05D000224 ORTHO05D000337 9.1e-06 54.3 61 50.8


User provided reference genes

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