Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 2106.3 1073 100.0
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 2097.4 1073 99.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 2079.3 1073 98.6
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1994.5 1073 93.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1974.9 1073 92.4
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1952.9 1073 92.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1779.6 1079 82.6
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1778.5 1085 82.3
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1765.7 1079 81.2
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1745.7 1081 81.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1745.7 1083 80.4
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1745.3 1081 80.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1739.9 1084 81.1
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1734.9 1087 79.3
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1734.9 1076 80.5
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1733.8 1080 80.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1726.8 1090 79.2
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1723.8 1073 79.9
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1087 79.4
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1719.5 1090 78.8
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1089 79.1
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1090 78.9
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1713.7 1090 78.5
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1712.6 1086 79.0
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1712.6 1100 78.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1710.7 1085 79.4
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1710.7 1090 78.3
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1708.7 1074 79.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1102 77.9
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1087 78.4
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1704.9 1082 78.7
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1702.2 1087 78.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1090 78.9
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1698.3 1091 78.5
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1697.9 1083 78.1
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1110 77.1
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1694.9 1094 78.4
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1684.5 1085 77.3
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1681.4 1091 78.1
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1076 78.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1085 77.5
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1676.8 1081 78.2
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1071 78.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1087 77.0
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1674.1 1087 76.6
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1105 76.8
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1669.1 1085 77.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1046 79.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1662.1 1086 76.3
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1658.3 1084 76.1
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1086 76.2
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1123 74.4
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1649.8 1078 75.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1080 76.9
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1082 76.0
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1078 76.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1120 74.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1028 78.8
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1640.6 1074 76.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1101 75.3
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1080 75.6
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1638.6 1007 79.2
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1637.5 1086 76.2
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1099 75.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1086 75.2
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1177 71.5
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1628.6 1196 70.6
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1628.6 1169 71.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1617.4 1064 75.2
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1615.9 1081 75.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1614.4 1075 75.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1612.0 1064 75.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1084 75.2
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1074 74.7
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1059 75.6
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1610.5 1064 75.0
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1607.8 1086 74.3
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1082 73.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1066 74.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1602.8 1082 73.8
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1601.6 1074 74.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 1074 74.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1074 74.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1074 74.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1074 74.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1594.7 1081 73.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1593.6 1085 73.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1592.0 1006 77.6
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1070 74.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1076 74.1
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1582.0 1069 73.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1082 73.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1577.8 1068 74.5
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1114 71.6
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1096 72.1
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1572.0 1116 71.7
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1570.1 1076 73.5
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1565.4 1077 72.7
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1565.1 1075 73.8
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1560.0 1081 72.4
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 1083 72.3
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1558.5 1146 69.1
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1557.3 1076 72.8
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1555.8 1077 72.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1553.5 1028 74.7
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1504.2 1009 75.0
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1495.3 969 75.4
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1480.3 869 83.0
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1478.8 1116 68.6
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1470.3 1093 70.4
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1465.7 914 78.6
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1461.8 1014 70.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1435.6 1014 68.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1396.3 1104 67.0
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1395.6 1104 66.9
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1375.1 748 94.5
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1368.2 957 69.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1317.4 801 80.0
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1299.6 1005 64.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1213.0 1058 59.5
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1198.3 842 72.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1178.7 752 78.6
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1114.8 1021 54.9
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1114.8 999 57.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1110.1 1028 55.1
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 722 75.9
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.5e-307 1059.7 739 71.9
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.2e-282 976.1 878 60.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 7.3e-278 961.1 876 57.4
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-273 945.7 777 61.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 6.6e-263 911.4 580 75.2
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-256 889.8 596 75.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 3.0e-247 859.4 967 46.2
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.0e-220 768.5 671 58.6
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.6e-211 740.7 646 60.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.7e-205 720.7 756 52.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.4e-204 716.8 445 79.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.2e-180 636.7 411 76.4
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.3e-175 620.5 508 67.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.4e-172 611.3 532 62.2
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.4e-172 610.5 399 78.2
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-170 604.7 408 73.5
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.7e-162 577.8 472 66.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 9.0e-159 565.5 1029 36.5
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 8.1e-152 542.3 347 79.8
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 6.0e-147 526.2 393 65.1
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.7e-130 469.5 328 70.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 8.2e-128 462.6 393 61.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.4e-126 457.2 309 71.5
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.8e-112 411.0 991 31.5
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.6e-107 395.2 943 30.2
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.7e-105 386.7 278 73.7
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.3e-103 380.2 951 28.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.5e-97 362.1 227 78.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.2e-92 343.2 908 30.1
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.2e-79 299.7 154 87.7
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 2.5e-60 238.4 864 24.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.0e-50 204.5 332 35.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 7.6e-49 200.3 310 42.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-48 198.7 222 48.2
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 7.1e-47 193.7 124 77.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 6.0e-46 190.7 220 52.7
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.6e-44 184.1 170 55.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.4e-42 179.5 152 58.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.2e-40 172.2 273 38.8
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.2e-39 168.3 151 66.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.0e-37 161.8 462 28.1
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.9e-37 161.4 125 65.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.1e-36 159.8 154 56.5
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.4e-34 152.1 149 54.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.5e-33 147.9 163 44.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 7.9e-30 137.1 430 27.0
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.9e-24 117.9 111 52.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 3.2e-23 115.2 296 27.0
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 4.6e-22 111.3 81 64.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.1e-18 98.6 83 62.7
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 4.2e-15 88.2 145 44.8
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.5e-12 79.0 55 63.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 5.7e-12 77.8 56 62.5
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 4.1e-10 71.6 48 68.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.2e-09 70.1 172 38.4
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.0e-08 67.0 48 66.7
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-07 62.4 77 44.2
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.2e-07 62.0 36 77.8


User provided reference genes

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