Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 3.1e-67 258.5 142 100.0
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 4.6e-63 244.6 142 93.7
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 2.0e-58 229.2 142 85.2
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 4.6e-55 218.0 142 83.1
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.3e-54 216.5 142 82.4
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 1.1e-53 213.4 142 81.0
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 4.2e-40 168.3 145 67.6
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 1.0e-38 163.7 144 66.7
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 2.0e-37 159.5 141 65.2
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 1.3e-36 156.8 146 61.6
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 1.7e-36 156.4 146 64.4
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 2.8e-36 155.6 142 65.5
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 2.8e-36 155.6 143 67.8
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 4.8e-36 154.8 143 62.9
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 6.3e-36 154.5 146 63.7
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 8.2e-36 154.1 175 56.0
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 1.1e-35 153.7 146 63.7
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 4.1e-35 151.8 145 61.4
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 4.1e-35 151.8 145 60.7
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 1.2e-34 150.2 145 62.8
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 1.2e-34 150.2 145 62.1
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 1.2e-34 150.2 144 63.9
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 1.2e-34 150.2 145 63.4
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 1.6e-34 149.8 140 63.6
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 2.0e-34 149.4 141 59.6
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 2.6e-34 149.1 145 60.0
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 2.6e-34 149.1 145 60.0
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 4.5e-34 148.3 148 61.5
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 5.9e-34 147.9 143 64.3
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.7e-33 146.4 146 60.3
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 2.2e-33 146.0 145 58.6
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 2.2e-33 146.0 152 59.2
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 3.8e-33 145.2 148 60.1
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 3.8e-33 145.2 142 59.2
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 3.8e-33 145.2 145 61.4
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 5.0e-33 144.8 145 60.0
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 5.0e-33 144.8 152 59.2
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 6.5e-33 144.4 148 61.5
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 6.5e-33 144.4 145 61.4
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 8.5e-33 144.1 145 60.0
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 8.5e-33 144.1 145 61.4
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 1.1e-32 143.7 147 58.5
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 1.5e-32 143.3 142 58.5
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 1.9e-32 142.9 146 61.0
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 1.9e-32 142.9 142 63.4
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 1.9e-32 142.9 145 59.3
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 3.2e-32 142.1 144 61.1
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 4.2e-32 141.7 144 61.8
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 4.2e-32 141.7 149 56.4
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 4.2e-32 141.7 145 60.0
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 5.5e-32 141.4 145 57.2
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 5.5e-32 141.4 150 58.0
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 7.2e-32 141.0 147 59.2
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 7.2e-32 141.0 144 57.6
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 9.4e-32 140.6 150 59.3
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 1.2e-31 140.2 142 59.9
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.2e-31 140.2 148 60.8
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 1.6e-31 139.8 136 61.0
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 2.1e-31 139.4 148 56.8
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 3.6e-31 138.7 141 58.9
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 3.6e-31 138.7 134 59.7
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 3.6e-31 138.7 143 56.6
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 3.6e-31 138.7 131 61.8
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 4.7e-31 138.3 153 58.8
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 4.7e-31 138.3 145 58.6
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 6.1e-31 137.9 145 55.9
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 6.1e-31 137.9 147 56.5
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 8.0e-31 137.5 120 65.8
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 1.4e-30 136.7 146 58.2
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 1.4e-30 136.7 153 58.8
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 1.4e-30 136.7 153 58.8
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 1.8e-30 136.3 153 58.2
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 1.8e-30 136.3 153 58.2
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 3.0e-30 135.6 144 57.6
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 3.0e-30 135.6 146 53.4
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 4.0e-30 135.2 152 55.3
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 5.2e-30 134.8 133 55.6
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 1.5e-29 133.3 152 56.6
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 1.5e-29 133.3 155 56.1
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 5.7e-29 131.3 149 53.0
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 5.7e-29 131.3 146 54.8
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 7.5e-29 131.0 153 54.2
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 2.8e-28 129.0 145 56.6
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 3.7e-28 128.6 131 56.5
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 8.2e-28 127.5 106 66.0
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 4.1e-27 125.2 132 58.3
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 5.3e-27 124.8 99 66.7
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 9.1e-27 124.0 143 51.7
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 9.1e-27 124.0 82 75.6
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.2e-26 123.6 132 57.6
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 2.7e-26 122.5 129 55.0
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 4.5e-26 121.7 133 54.9
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 3.8e-25 118.6 132 53.0
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 2.5e-24 115.9 132 53.8
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 4.2e-24 115.2 95 60.0
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 9.4e-24 114.0 123 50.4
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 1.6e-23 113.2 92 65.2
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 4.7e-23 111.7 117 54.7
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 6.8e-22 107.8 137 51.1
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 3.4e-21 105.5 69 81.2
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 1.7e-20 103.2 142 43.7
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 1.4e-19 100.1 82 58.5
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 1.6e-18 96.7 132 47.7
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 1.6e-18 96.7 83 60.2
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 1.0e-17 94.0 114 50.9
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 2.1e-15 86.3 84 50.0
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 6.1e-15 84.7 102 49.0
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 1.0e-14 84.0 134 41.8
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 4.0e-14 82.0 147 40.1
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 6.8e-14 81.3 55 78.2
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.2e-13 80.5 108 47.2
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 4.4e-13 78.6 82 50.0
Peaxi162Scf00447g00114 Petunia axillaris HOM05D000049 ORTHO05D008785 7.5e-13 77.8 60 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 2.2e-12 76.3 83 45.8
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 1.6e-10 70.1 122 45.1
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 3.3e-08 62.4 63 58.7
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 3.6e-07 58.9 60 51.7
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 4.0e-06 55.5 34 76.5


User provided reference genes

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