Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 0.0e+00 1214.1 645 100.0
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 0.0e+00 1201.4 645 99.4
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 1.3e-285 986.1 655 82.4
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 5.9e-283 977.2 668 81.6
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 8.0e-280 966.8 623 85.2
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 3.3e-209 732.3 650 62.0
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.6e-198 696.0 648 60.3
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.0e-197 694.1 648 60.2
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 4.2e-196 688.7 663 59.0
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.4e-194 683.7 648 59.0
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 5.9e-190 668.3 656 58.2
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 4.7e-187 658.7 657 57.8
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.8e-186 656.8 653 57.1
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 6.7e-186 654.8 650 57.1
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 9.1e-183 644.4 647 57.8
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.3e-181 640.6 647 58.1
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 6.5e-181 638.3 632 59.0
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 5.5e-180 635.2 671 55.3
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.7e-179 632.9 650 56.5
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 1.3e-176 624.0 643 55.8
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 1.7e-176 623.6 653 56.0
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 3.7e-176 622.5 647 55.3
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 3.7e-176 622.5 654 56.0
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 1.8e-175 620.2 653 55.4
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 5.4e-175 618.6 654 55.7
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 7.0e-175 618.2 650 55.1
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 5.9e-174 615.1 652 55.7
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 7.7e-174 614.8 650 54.6
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 2.9e-173 612.8 648 53.9
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 3.8e-173 612.5 597 58.6
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 9.5e-172 607.8 668 53.3
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.6e-171 607.1 668 53.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.8e-170 603.6 653 53.9
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.8e-167 593.6 642 55.0
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 4.1e-167 592.4 645 53.3
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 9.2e-167 591.3 679 52.6
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.5e-166 589.3 639 54.3
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 1.0e-165 587.8 644 53.4
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 3.3e-164 582.8 680 52.1
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 7.3e-164 581.6 677 51.3
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 8.0e-163 578.2 643 53.8
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 1.4e-162 577.4 641 53.0
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.4e-162 577.4 647 55.0
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 2.6e-161 573.2 652 52.3
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 9.8e-161 571.2 631 53.4
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.7e-160 570.5 632 53.6
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 1.7e-160 570.5 640 52.8
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.9e-160 569.7 637 53.1
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 4.9e-160 568.9 652 51.7
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 4.9e-160 568.9 630 53.3
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 1.4e-159 567.4 648 52.3
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 2.4e-159 566.6 609 53.9
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 4.1e-159 565.8 649 51.8
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 5.4e-159 565.5 704 48.9
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 4.3e-156 555.8 644 51.2
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 6.8e-154 548.5 640 49.4
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 2.0e-153 547.0 667 49.6
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 4.9e-152 542.3 761 45.5
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 2.4e-151 540.0 652 50.6
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 2.5e-148 530.0 641 50.5
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 7.3e-148 528.5 527 56.0
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 9.5e-148 528.1 786 43.8
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 2.1e-147 526.9 640 49.5
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 6.2e-147 525.4 643 49.6
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 8.1e-147 525.0 641 49.5
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 3.1e-146 523.1 626 51.4
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 2.0e-145 520.4 637 49.3
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 3.7e-144 516.2 646 48.8
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 5.4e-143 512.3 669 47.1
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 5.4e-143 512.3 659 49.3
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 7.8e-142 508.4 599 51.3
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 1.7e-141 507.3 669 46.9
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 8.6e-141 505.0 673 46.7
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 9.5e-140 501.5 693 46.3
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 1.8e-138 497.3 640 46.6
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 4.0e-138 496.1 669 46.5
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 5.8e-137 492.3 640 48.1
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 3.2e-135 486.5 693 45.7
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 9.2e-135 485.0 644 47.0
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.7e-133 480.7 422 63.5
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 1.7e-133 480.7 590 49.7
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.1e-130 471.5 493 57.0
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 3.4e-129 466.5 650 45.2
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 1.2e-126 458.0 516 52.9
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 3.5e-126 456.4 528 51.1
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 1.7e-125 454.1 454 57.0
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 5.6e-124 449.1 453 58.1
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.6e-123 447.6 660 43.9
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 9.0e-122 441.8 663 43.7
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 3.0e-117 426.8 645 44.5
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 6.2e-115 419.1 484 52.3
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.3e-112 411.4 703 40.8
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.9e-106 389.0 640 40.2
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.5e-105 387.9 672 39.7
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.7e-102 377.1 637 39.2
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 3.3e-100 370.2 649 39.3
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 2.8e-99 367.1 663 38.9
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 4.8e-99 366.3 478 48.3
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.2e-95 353.2 449 49.7
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 2.8e-91 340.5 192 94.3
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.1e-90 336.7 411 50.1
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 6.9e-90 335.9 494 44.5
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 5.5e-79 299.7 159 96.9
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.8e-77 294.7 829 32.2
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 2.2e-72 277.7 510 38.0
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 3.1e-66 257.3 316 52.5
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.0e-66 256.1 216 61.6
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 6.8e-61 239.6 328 50.6
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 1.5e-55 221.9 261 53.3
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 1.4e-53 215.3 165 67.3
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.8e-51 207.6 813 28.3
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 2.3e-48 198.0 206 53.4
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 8.6e-48 196.1 741 29.3
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 5.6e-47 193.4 150 68.7
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.3e-40 171.4 219 45.2
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.1e-26 125.9 301 34.9
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 6.0e-25 120.2 204 37.7
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 2.3e-24 118.2 101 59.4
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 4.0e-21 107.5 78 67.9
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.8e-19 100.9 94 61.7
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 6.4e-19 100.1 91 62.6
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 4.6e-17 94.0 90 62.2
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 2.4e-13 81.6 47 85.1
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 3.2e-10 71.2 95 44.2
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.3e-08 65.9 77 48.1
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 3.9e-08 64.3 50 70.0
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 8.7e-08 63.2 52 53.8
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 1.5e-07 62.4 122 36.9
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 1.3e-06 59.3 77 46.8


User provided reference genes

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