Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.2e-24 115.9 67 100.0
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.2e-24 115.9 67 100.0
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.4e-22 109.0 65 95.4
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 2.7e-21 104.8 65 89.2
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.6e-21 104.0 65 89.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.3e-19 97.8 60 90.0
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 4.3e-19 97.4 65 84.6
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.6e-19 97.1 65 83.1
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.6e-19 96.3 60 88.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.3e-18 95.9 63 82.5
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 83.1
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.1e-18 95.1 65 83.1
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 2.1e-18 95.1 63 84.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.1e-18 95.1 60 86.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.8e-18 94.7 65 80.0
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.8e-18 94.7 65 80.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 3.6e-18 94.4 65 81.5
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 4.8e-18 94.0 65 81.5
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 6.2e-18 93.6 60 85.0
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.2e-18 93.6 65 81.5
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 8.1e-18 93.2 63 81.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 8.1e-18 93.2 67 82.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.1e-18 93.2 65 78.5
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-17 92.4 65 78.5
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 80.3
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.4e-17 92.4 64 82.8
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.8e-17 92.0 65 78.5
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.4e-17 91.7 65 78.5
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.1e-17 91.3 66 81.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 3.1e-17 91.3 65 83.1
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 3.1e-17 91.3 65 83.1
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 5.3e-17 90.5 61 86.9
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.5e-16 89.0 66 80.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.0e-16 88.6 66 75.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.6e-16 88.2 68 77.9
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.6e-16 88.2 63 82.5
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.4e-16 87.8 68 77.9
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 3.4e-16 87.8 61 85.2
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 3.4e-16 87.8 61 83.6
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.5e-16 87.4 66 77.3
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 5.8e-16 87.0 61 83.6
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 7.6e-16 86.7 63 76.2
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 7.6e-16 86.7 63 73.0
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.9e-16 86.3 65 73.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 9.9e-16 86.3 65 72.3
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.9e-16 86.3 60 78.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.3e-15 85.9 68 75.0
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 72.3
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.3e-15 85.9 68 73.5
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.7e-15 85.5 65 78.5
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 72.3
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 75.4
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.9e-15 84.7 67 74.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.9e-15 84.7 67 74.6
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.8e-15 84.3 68 73.5
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.8e-15 84.3 63 77.8
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.9e-15 84.0 67 73.1
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.9e-15 84.0 67 73.1
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 6.4e-15 83.6 66 75.8
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 8.4e-15 83.2 67 73.1
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.4e-14 82.4 67 73.1
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.9e-14 82.0 71 69.0
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.9e-14 82.0 71 69.0
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.2e-14 81.3 66 72.7
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.2e-14 80.9 63 69.8
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 5.5e-14 80.5 63 69.8
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 5.5e-14 80.5 67 68.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 5.5e-14 80.5 65 75.4
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 5.5e-14 80.5 67 73.1
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.2e-13 79.3 60 76.7
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.1e-13 78.6 59 76.3
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 3.5e-13 77.8 63 68.3
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.5e-13 77.8 66 69.7
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 3.5e-13 77.8 62 74.2
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 6.0e-13 77.0 68 66.2
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 6.0e-13 77.0 66 66.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.3e-12 75.9 68 66.2
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.8e-12 75.5 67 67.2
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.3e-12 75.1 63 66.7
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 3.0e-12 74.7 70 67.1
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 3.0e-12 74.7 59 76.3
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 5.1e-12 73.9 65 66.2
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 5.1e-12 73.9 44 95.5
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 8.7e-12 73.2 66 63.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 8.7e-12 73.2 66 63.6
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 8.7e-12 73.2 58 77.6
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 67.2
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 67.2
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.1e-11 72.8 70 64.3
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 67.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 67.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 67.2
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.9e-11 72.0 52 80.8
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.5e-11 71.6 56 75.0
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 4.3e-11 70.9 73 63.0
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.8e-10 68.2 61 59.0
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.8e-10 68.2 61 59.0
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.8e-10 67.4 58 65.5
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.1e-09 66.2 63 61.9
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 2.6e-08 61.6 62 61.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 2.6e-08 61.6 65 61.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.5e-08 60.8 54 64.8
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 5.8e-08 60.5 76 55.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.8e-08 60.5 58 60.3
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.2e-07 58.5 59 57.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.2e-07 58.5 54 64.8
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.2e-07 58.5 60 58.3
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.9e-07 58.2 58 60.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.9e-07 58.2 58 62.1
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.8e-07 57.8 52 63.5
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-07 57.8 58 58.6
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.8e-07 57.8 54 61.1
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.8e-07 57.8 60 60.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.9e-07 57.4 56 57.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.9e-07 57.4 56 57.1
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.9e-07 57.4 58 60.3
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.5e-07 57.0 54 63.0
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 61.1
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 61.1
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 61.1
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 61.1
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.9e-06 55.5 57 63.2
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.5e-06 55.1 58 62.1
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 2.5e-06 55.1 56 60.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.2e-06 54.7 54 59.3
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 3.2e-06 54.7 59 54.2
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.2e-06 54.3 57 57.9
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.2e-06 54.3 54 59.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 5.5e-06 53.9 57 54.4
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 5.5e-06 53.9 55 58.2
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 5.5e-06 53.9 57 54.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.5e-06 53.9 57 54.4
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 7.1e-06 53.5 54 57.4
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 7.1e-06 53.5 57 57.9
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.1e-06 53.5 57 57.9
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 7.1e-06 53.5 55 58.2
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 7.1e-06 53.5 54 55.6
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 9.3e-06 53.1 52 59.6


User provided reference genes

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