Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 6.1e-115 417.5 217 100.0
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.1e-111 406.8 217 98.6
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 2.0e-110 402.5 217 97.2
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 8.0e-99 364.0 219 88.1
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.7e-91 338.2 218 83.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 8.9e-90 334.0 218 83.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.2e-83 313.5 217 79.3
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 3.4e-65 252.3 219 63.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.0e-61 240.7 227 58.6
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.7e-61 240.0 226 58.4
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.7e-61 240.0 224 59.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 3.0e-61 239.2 224 60.7
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 6.6e-61 238.0 219 61.6
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 8.6e-61 237.7 220 60.9
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.1e-60 237.3 220 61.4
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.9e-60 236.5 219 60.3
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.5e-60 236.1 224 61.2
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 9.6e-60 234.2 205 62.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 3.1e-58 229.2 225 57.3
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 5.2e-58 228.4 220 55.9
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.2e-57 227.3 218 60.1
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.2e-57 227.3 228 57.9
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.6e-57 226.1 220 59.5
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 4.4e-57 225.3 228 61.0
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 4.4e-57 225.3 219 60.3
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 9.9e-57 224.2 224 57.6
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.7e-56 223.4 219 58.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.2e-56 223.0 219 58.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.2e-56 223.0 222 59.0
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 6.4e-56 221.5 222 57.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-55 220.7 229 54.6
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.4e-55 220.3 219 57.5
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.4e-55 220.3 209 60.3
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.4e-55 219.5 238 54.6
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.4e-55 219.5 219 57.5
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 4.2e-55 218.8 176 63.6
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.2e-55 218.8 219 57.1
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 4.2e-55 218.8 220 57.3
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.2e-55 218.8 229 55.0
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.1e-55 218.0 221 59.7
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 9.3e-55 217.6 225 56.9
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 9.3e-55 217.6 226 57.1
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.2e-54 217.2 219 56.2
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.2e-54 217.2 218 56.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.2e-54 217.2 222 58.1
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.1e-54 216.5 241 57.3
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.7e-54 216.1 215 60.5
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.5e-54 215.7 218 56.0
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 3.5e-54 215.7 220 58.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 4.6e-54 215.3 207 61.4
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 6.0e-54 214.9 224 55.8
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.0e-53 214.2 221 57.9
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.0e-53 214.2 226 55.8
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.3e-53 213.8 223 54.7
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.9e-52 209.9 235 55.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.3e-52 209.1 169 62.7
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 7.3e-52 208.0 154 68.2
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 9.6e-52 207.6 171 67.8
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.6e-51 206.8 213 54.9
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.1e-51 206.5 227 53.3
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 3.6e-51 205.7 220 54.5
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.8e-51 205.3 226 53.1
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.8e-51 205.3 226 54.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 8.1e-51 204.5 222 55.9
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 8.1e-51 204.5 225 56.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 2.4e-50 203.0 223 54.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 2.4e-50 203.0 171 63.2
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.4e-50 203.0 212 54.2
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 2.4e-50 203.0 215 56.7
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 3.1e-50 202.6 154 68.8
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.9e-50 201.4 210 54.3
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 2.0e-49 199.9 223 53.4
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 2.0e-49 199.9 253 49.4
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.6e-49 199.5 159 67.3
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 3.4e-49 199.1 154 68.2
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 4.5e-49 198.7 153 68.0
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 4.5e-49 198.7 221 55.2
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.7e-48 196.8 144 72.9
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.2e-48 196.4 219 53.0
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.2e-48 196.4 223 55.2
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 4.9e-48 195.3 221 55.7
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 8.4e-48 194.5 180 58.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.9e-47 193.4 277 45.5
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 9.3e-47 191.0 219 52.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.2e-46 190.7 167 61.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 2.1e-46 189.9 167 58.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.0e-45 187.6 170 58.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-45 187.2 164 61.0
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 3.9e-45 185.7 167 59.3
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 3.9e-45 185.7 165 58.2
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 3.9e-45 185.7 157 63.1
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 6.7e-45 184.9 167 57.5
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 8.7e-45 184.5 145 67.6
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 2.5e-44 183.0 166 56.0
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.3e-44 182.6 164 59.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 4.3e-44 182.2 167 59.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 7.4e-44 181.4 166 57.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.6e-43 180.3 166 56.6
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 3.6e-43 179.1 153 62.1
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 6.2e-43 178.3 166 57.2
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 6.9e-42 174.9 159 59.7
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 6.9e-42 174.9 159 59.7
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-41 174.1 159 59.1
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 1.5e-41 173.7 159 59.1
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.0e-41 173.3 159 59.1
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 5.8e-41 171.8 222 49.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.3e-40 170.6 155 58.7
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.1e-39 167.5 160 52.5
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.2e-39 166.0 161 53.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 7.1e-39 164.9 182 53.8
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 2.1e-38 163.3 193 54.9
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.3e-37 159.8 190 51.1
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.5e-36 156.4 129 67.4
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 4.3e-36 155.6 144 56.9
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 7.4e-36 154.8 128 68.0
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 4.0e-34 149.1 219 43.8
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 9.0e-34 147.9 117 70.1
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 2.6e-33 146.4 148 54.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 7.6e-33 144.8 170 52.9
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 5.5e-31 138.7 145 57.2
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.3e-29 133.3 150 52.7
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.1e-28 131.0 113 66.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 4.3e-28 129.0 215 41.9
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 5.7e-28 128.6 95 72.6
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 6.3e-27 125.2 164 43.9
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 2.4e-26 123.2 156 47.4
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.1e-26 122.9 157 52.9
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 2.6e-25 119.8 142 52.1
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 3.4e-25 119.4 191 42.4
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.8e-24 115.9 174 46.0
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 6.1e-22 108.6 85 62.4
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.0e-21 107.8 167 43.1
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 2.3e-21 106.7 145 47.6
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 8.7e-21 104.8 88 59.1
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.6e-19 100.5 79 69.6
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 4.8e-19 99.0 95 57.9
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 8.2e-19 98.2 116 53.4
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 3.1e-18 96.3 78 69.2
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 4.5e-17 92.4 143 42.7
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.7e-16 90.5 199 37.7
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 5.0e-16 89.0 94 52.1
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 1.6e-14 84.0 115 49.6
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 5.7e-12 75.5 53 69.8
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-12 75.5 71 56.3
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 2.4e-10 70.1 88 43.2
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.1e-10 69.3 136 37.5
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 2.6e-09 66.6 130 36.9
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 2.9e-08 63.2 103 45.6
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.6e-06 57.4 161 33.5
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 2.7e-06 56.6 74 45.9


User provided reference genes

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