Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 0.0e+00 1325.5 699 100.0
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 0.0e+00 1241.5 670 98.1
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 0.0e+00 1172.1 673 92.9
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 9.7e-263 910.2 703 72.4
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.9e-259 898.7 710 71.3
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 8.8e-232 807.4 695 67.6
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.5e-114 417.9 754 40.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.7e-111 407.1 775 40.1
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 2.2e-110 404.1 560 47.5
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.6e-106 390.6 783 39.2
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.4e-106 390.2 742 42.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 6.1e-100 369.4 726 39.5
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 8.0e-100 369.0 702 41.3
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.3e-99 367.5 685 39.9
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.4e-96 357.5 641 42.3
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 4.5e-95 353.2 706 39.2
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.5e-93 347.4 726 38.0
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.0e-91 342.0 765 36.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.3e-89 335.1 742 35.7
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.5e-87 327.0 673 39.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 4.6e-87 326.6 741 36.0
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.5e-85 320.9 723 36.7
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 4.0e-83 313.5 739 35.6
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.0e-83 313.5 739 35.6
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.0e-82 311.2 732 37.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.0e-82 311.2 703 36.0
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 5.8e-82 309.7 686 38.0
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-81 308.5 725 36.0
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.1e-80 305.4 754 33.7
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 4.1e-80 303.5 734 35.8
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.1e-80 303.5 746 35.8
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 7.0e-80 302.8 773 34.5
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 7.0e-80 302.8 510 43.3
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.2e-79 302.0 739 36.0
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.7e-79 300.8 654 37.8
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 6.0e-79 299.7 765 33.7
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 7.8e-79 299.3 757 34.6
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.0e-78 298.9 681 36.0
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-78 297.7 688 36.8
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-78 297.7 691 35.9
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 6.6e-78 296.2 677 37.4
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 8.6e-78 295.8 688 36.6
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.3e-77 293.5 771 34.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 4.3e-77 293.5 742 34.4
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.2e-76 292.0 681 36.0
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.2e-76 289.7 750 33.3
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.1e-75 288.9 512 40.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.4e-75 288.5 734 34.2
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.9e-75 285.8 778 34.4
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.4e-74 283.5 692 33.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 7.1e-72 276.2 709 36.2
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.6e-71 275.0 759 34.7
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 2.1e-71 274.6 514 40.3
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.5e-71 273.9 805 32.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.8e-71 272.7 634 39.7
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.3e-70 271.2 597 36.7
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 3.9e-70 270.4 616 36.4
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 8.6e-70 269.2 621 35.9
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 3.3e-69 267.3 552 37.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 8.1e-68 262.7 791 31.2
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 5.2e-67 260.0 230 58.3
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 8.9e-67 259.2 674 33.4
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 2.6e-66 257.7 335 46.0
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.3e-65 255.4 363 44.4
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.3e-65 255.4 695 34.0
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 6.4e-65 253.1 716 33.9
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 3.5e-63 247.3 673 33.6
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 7.8e-63 246.1 745 33.6
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 7.8e-63 246.1 721 33.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.7e-62 245.0 661 34.5
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 3.9e-62 243.8 738 32.2
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.1e-61 242.3 683 32.7
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.5e-61 241.1 694 32.4
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.5e-61 241.1 743 32.0
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 7.3e-61 239.6 509 38.3
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 4.8e-60 236.9 689 32.4
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 4.8e-60 236.9 662 32.3
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.8e-59 235.0 689 31.3
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.1e-59 234.2 281 51.6
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 3.1e-59 234.2 703 30.9
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.3e-59 233.4 231 54.5
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.2e-58 232.3 707 31.4
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.0e-58 231.5 723 32.6
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.4e-58 230.7 690 32.9
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 3.4e-58 230.7 671 31.7
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.4e-58 230.7 806 29.7
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 5.8e-58 229.9 833 28.6
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.3e-57 228.8 673 32.4
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.3e-57 228.8 760 32.6
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 9.3e-56 222.6 742 32.9
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 4.6e-55 220.3 674 30.7
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.0e-54 219.2 674 31.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.3e-54 218.8 565 34.7
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 3.9e-54 217.2 674 30.9
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 6.6e-54 216.5 846 29.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.1e-53 215.7 629 29.9
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.9e-53 214.9 737 29.9
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 2.5e-53 214.5 687 31.9
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-52 212.2 666 32.3
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.8e-51 208.4 810 28.6
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 9.0e-51 206.1 727 29.7
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.8e-50 203.4 685 30.7
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 1.3e-49 202.2 662 30.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.3e-49 202.2 756 30.2
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.9e-48 198.4 661 32.5
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 3.2e-48 197.6 515 32.2
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 4.2e-48 197.2 270 45.9
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.6e-47 195.3 687 30.6
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.8e-44 183.7 659 29.4
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 5.3e-43 180.3 720 29.9
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.2e-34 152.5 429 34.5
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.9e-32 145.2 644 28.4
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 7.9e-31 139.8 620 27.9
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.0e-30 139.4 644 28.1
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 3.9e-30 137.5 515 28.7
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 6.3e-28 130.2 584 27.9
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.4e-27 129.0 570 28.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.4e-27 129.0 93 66.7
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 3.2e-24 117.9 121 57.9
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 4.8e-20 104.0 94 56.4
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.5e-18 97.4 127 48.0
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.5e-17 93.6 359 31.5
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.4e-16 92.4 162 35.2
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.8e-14 85.5 335 28.7
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-13 82.8 130 43.1
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 6.3e-12 77.0 60 58.3
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 1.8e-11 75.5 153 35.9
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 7.0e-11 73.6 79 46.8
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.9e-10 70.5 90 47.8
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.1e-08 66.2 47 68.1
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.6e-07 61.2 46 67.4
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 4.7e-07 60.8 50 54.0
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 6.1e-07 60.5 48 56.2
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 1.0e-06 59.7 105 39.0
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.3e-06 58.5 300 26.3
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.0e-06 58.2 35 71.4
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 5.2e-06 57.4 53 50.9


User provided reference genes

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