Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 2356.6 1258 100.0
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 2303.9 1253 97.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 2167.9 1239 93.1
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 2026.9 1275 85.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1805.0 1265 78.5
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1799.6 1256 78.3
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1538.1 1269 67.8
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1536.2 1258 67.6
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1530.0 1224 67.9
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1525.8 1269 65.3
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1509.6 1223 66.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1504.2 1265 65.2
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1504.2 1260 64.4
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1478.4 1261 66.7
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1470.7 1196 65.9
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1448.7 1288 64.0
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1446.0 1264 62.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1443.7 1260 63.5
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1438.7 1218 62.8
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1436.4 1229 62.3
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1428.7 1260 61.1
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1423.7 1282 59.8
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1423.7 1283 62.5
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1422.5 1255 61.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1422.1 1246 62.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1415.2 1269 61.9
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1413.7 1260 59.8
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1412.1 1267 62.0
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1408.3 1273 60.9
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1402.9 1211 62.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1402.5 1230 63.7
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1398.6 1253 59.8
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1398.6 1188 64.0
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1397.9 1323 59.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1397.1 1259 60.3
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1396.3 1244 60.9
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1396.3 1178 63.2
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1395.2 1252 60.1
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1393.3 1176 64.2
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1392.9 1254 59.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1389.4 1191 62.6
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1385.2 1257 60.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1381.3 1243 60.3
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1376.3 1186 60.9
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1373.2 1227 60.3
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1370.9 1239 59.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1370.9 1244 60.9
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1370.1 1173 60.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1256 59.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1368.6 1257 59.8
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1368.6 1222 62.1
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1366.3 1261 58.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1365.5 1258 60.0
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1365.5 1176 62.8
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1247 61.4
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1358.6 1157 62.1
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1357.0 1228 59.0
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1354.3 1212 60.6
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1350.5 1231 59.2
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1348.6 1206 60.0
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1347.8 1248 60.1
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1347.0 1172 60.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1345.9 1287 58.4
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1344.7 1235 60.2
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1342.0 1194 61.1
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1338.9 1198 61.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1336.2 1255 58.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1335.9 1273 59.0
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1197 61.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1330.5 1317 56.2
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1329.3 1224 60.1
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1328.5 1259 58.4
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1324.3 1259 59.0
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1322.4 1231 60.0
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1320.8 1232 59.3
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1307.4 1168 59.3
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1305.0 1256 58.5
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1300.0 1268 56.9
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1294.6 1175 61.0
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1284.6 1267 56.8
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1270.8 1267 56.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1266.1 1190 58.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1254.2 1187 58.2
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1252.7 1277 54.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1248.4 1186 58.2
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1238.0 1184 57.5
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1237.6 1274 54.9
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1236.1 1208 56.9
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1223.0 1184 57.6
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1223.0 1184 57.6
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1222.2 1208 56.4
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1220.3 1189 57.0
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1201.0 1276 52.2
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1187.6 1255 53.5
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1184.1 1165 56.2
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1175.6 1068 59.5
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1159.4 1261 53.8
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1146.3 1218 53.5
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1127.5 1289 51.9
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 8.6e-312 1074.3 943 63.7
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 8.2e-305 1050.8 1315 46.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.1e-304 1048.9 1102 54.5
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 6.5e-302 1041.2 1179 49.8
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 1.8e-299 1033.1 1236 47.4
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 3.2e-293 1012.3 755 70.2
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.0e-286 990.7 1257 46.1
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 2.5e-277 959.5 1228 46.8
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.0e-274 949.9 1242 45.5
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 7.6e-242 841.6 670 66.3
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 3.3e-213 746.5 1094 41.5
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.1e-207 727.2 1255 39.8
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 6.5e-177 625.9 429 73.0
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 7.3e-168 595.9 825 47.2
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.0e-157 561.2 522 60.5
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.3e-150 537.7 672 51.9
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.3e-150 537.7 1192 34.7
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.3e-140 505.4 1202 31.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.9e-140 503.4 1261 32.3
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.2e-139 500.7 1222 31.9
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.0e-137 495.7 449 60.4
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 4.7e-135 486.9 441 61.0
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 8.9e-134 482.6 1273 31.4
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 3.5e-130 470.7 608 45.1
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.4e-126 458.8 1129 31.4
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 7.7e-93 346.7 1294 26.9
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.8e-92 344.4 1029 31.2
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 8.5e-84 316.6 1028 29.6
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.6e-72 278.5 264 57.6
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 5.3e-70 270.8 481 36.6
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.3e-68 266.2 481 36.4
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 3.6e-66 258.1 317 47.6
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.7e-61 241.9 217 63.1
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.4e-46 192.2 351 37.9
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-38 166.8 128 70.3
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.0e-32 146.0 1259 23.1
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.3e-31 143.3 1218 22.2
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.2e-29 136.7 121 62.8
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 3.3e-27 128.6 191 45.5
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.2e-26 126.7 92 65.2
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 6.8e-25 120.9 138 51.4
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.9e-20 105.1 184 38.0
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 3.6e-18 98.6 140 39.3
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 5.2e-17 94.7 73 65.8
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 9.0e-17 94.0 61 73.8
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.0e-16 92.8 112 50.0
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.2e-15 89.4 71 54.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.8e-15 88.6 79 58.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 6.0e-13 81.3 53 71.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 6.0e-13 81.3 53 71.7
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 3.0e-12 79.0 84 46.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-09 70.1 89 49.4
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 1.7e-07 63.2 49 63.3
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 4.9e-07 61.6 67 44.8
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 1.9e-06 59.7 50 56.0
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.4e-06 59.3 41 73.2
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 4.2e-06 58.5 67 44.8


User provided reference genes

Program Settings