Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.2e-104 383.3 200 100.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.4e-104 381.7 200 99.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.7e-100 367.1 200 95.5
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 6.3e-90 334.3 200 87.0
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.5e-86 322.4 181 89.5
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.3e-86 320.5 191 85.9
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.8e-82 308.9 202 83.2
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.5e-67 260.0 178 74.2
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.0e-67 259.6 201 68.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.0e-67 259.6 195 68.7
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.3e-67 258.8 186 71.5
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 5.7e-67 258.1 198 66.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-66 256.9 180 71.1
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.2e-66 256.1 201 68.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-65 253.4 169 75.1
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.8e-65 253.1 174 70.1
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.8e-65 253.1 197 67.0
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 4.1e-65 251.9 198 66.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.1e-65 251.9 181 70.2
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.1e-65 251.9 178 70.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.0e-65 251.1 195 67.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.0e-65 251.1 181 70.2
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.2e-64 250.4 205 65.4
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.0e-64 249.6 188 67.6
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.0e-64 249.6 181 67.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.6e-64 249.2 184 70.1
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 3.5e-64 248.8 176 69.9
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 5.9e-64 248.1 178 70.2
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.0e-63 247.3 170 70.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.0e-63 247.3 169 73.4
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.3e-63 246.9 199 64.8
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.3e-63 246.9 184 67.9
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.7e-63 246.5 190 65.8
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.7e-63 246.5 180 71.1
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 2.2e-63 246.1 199 63.8
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.2e-63 246.1 170 72.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.9e-63 245.7 175 68.0
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.8e-63 245.4 178 68.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 5.0e-63 245.0 180 68.9
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 6.5e-63 244.6 181 67.4
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.1e-62 243.8 178 70.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.5e-62 243.4 174 69.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.9e-62 243.0 183 65.6
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.9e-62 243.0 199 66.8
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.5e-62 242.7 178 69.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.2e-62 242.3 172 69.8
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 4.2e-62 241.9 175 68.0
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.5e-62 241.5 188 66.5
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 9.4e-62 240.7 170 71.8
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.2e-61 240.4 168 72.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.2e-61 240.4 202 62.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.6e-61 240.0 160 73.1
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-61 240.0 209 64.6
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.7e-61 239.2 195 65.1
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 6.1e-61 238.0 175 66.9
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.1e-61 238.0 175 66.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.1e-61 238.0 200 63.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 6.1e-61 238.0 178 65.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 8.0e-61 237.7 174 69.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.4e-60 236.9 200 59.5
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.8e-60 236.5 202 60.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.3e-60 236.1 201 60.7
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 2.3e-60 236.1 197 61.4
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.0e-60 235.7 169 68.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 4.0e-60 235.3 177 65.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 5.2e-60 235.0 169 69.8
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 6.7e-60 234.6 183 66.1
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 6.7e-60 234.6 183 66.1
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 8.8e-60 234.2 183 66.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 8.8e-60 234.2 184 64.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 8.8e-60 234.2 184 64.7
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 8.8e-60 234.2 183 66.1
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 8.8e-60 234.2 200 60.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.0e-59 233.0 174 67.8
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.3e-59 232.3 188 61.2
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 4.4e-59 231.9 188 61.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 4.4e-59 231.9 181 64.6
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.7e-59 231.5 177 65.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 5.7e-59 231.5 208 62.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 7.5e-59 231.1 195 62.1
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 9.7e-59 230.7 197 60.9
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.7e-59 230.7 227 59.9
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.7e-58 229.9 162 69.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.2e-58 229.6 188 63.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.2e-58 229.6 196 61.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.4e-57 226.9 185 61.1
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.8e-57 226.5 182 59.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 3.1e-57 225.7 150 73.3
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 4.1e-57 225.3 170 68.8
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 5.3e-57 224.9 171 66.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 9.1e-57 224.2 184 64.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.0e-56 223.0 157 69.4
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.0e-56 223.0 200 59.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.7e-56 222.6 197 60.9
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.5e-56 222.2 197 61.4
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 5.9e-56 221.5 198 59.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.7e-55 219.9 205 58.0
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.7e-55 219.9 172 64.0
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.2e-55 219.5 173 65.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.8e-55 218.8 175 64.6
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.9e-54 216.5 211 55.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.5e-54 214.9 207 55.1
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.5e-54 214.9 156 68.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.5e-54 214.9 156 68.6
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 9.4e-54 214.2 159 66.7
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.2e-53 213.8 222 53.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.1e-53 213.0 159 66.0
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.1e-53 213.0 172 64.0
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.1e-53 213.0 180 60.6
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.6e-53 212.2 192 58.9
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.0e-53 211.1 164 65.9
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.0e-52 210.7 167 62.9
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.8e-52 209.9 177 61.0
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.0e-52 209.1 212 53.3
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.5e-51 206.8 182 61.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.2e-50 203.0 184 56.5
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.8e-50 202.6 164 59.8
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.4e-49 199.5 178 59.0
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.0e-49 198.0 189 58.2
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.0e-47 191.8 173 59.0
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-45 186.8 165 55.2
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.1e-45 186.4 141 64.5
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 6.1e-45 184.9 191 53.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.8e-44 183.3 181 56.9
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.3e-44 183.0 215 49.3
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.8e-44 181.4 177 52.5
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 5.7e-43 178.3 168 55.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.9e-38 163.3 157 56.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 8.0e-37 157.9 163 52.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.5e-35 151.4 168 48.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.4e-33 147.1 171 49.1
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.4e-33 146.4 171 45.6
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.0e-32 143.3 103 69.9
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.8e-32 141.4 99 71.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.3e-31 139.8 100 71.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 6.6e-31 138.3 114 62.3
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.6e-31 137.9 125 55.2
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.4e-27 125.9 84 72.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 3.4e-27 125.9 93 66.7
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 4.4e-27 125.6 114 59.6
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.4e-27 125.6 141 50.4
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.8e-27 125.2 116 60.3
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.4e-25 119.8 102 62.7
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.3e-23 114.0 85 67.1
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.5e-22 110.5 103 58.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.6e-19 99.8 76 71.1
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.3e-18 97.4 82 59.8
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.2e-18 96.7 136 44.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 6.4e-18 95.1 68 63.2
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.5e-11 73.9 125 35.2
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.6e-11 73.2 63 63.5
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.4e-09 66.6 49 67.3
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.6e-08 63.9 42 69.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.7e-08 63.2 96 38.5
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 4.6e-08 62.4 46 63.0
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.5e-06 57.4 43 67.4
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.3e-06 55.8 41 65.9
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 9.6e-06 54.7 43 65.1


User provided reference genes

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