Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105700.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 6.1e-24 113.2 54 100.0
Migut.B00565 Erythranthe guttata HOM05D001755 ORTHO05D001665 9.1e-20 99.4 54 87.0
Sed0014860 Sechium edule HOM05D001755 ORTHO05D001665 1.2e-19 99.0 54 87.0
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 7.7e-19 96.3 54 87.0
CiPaw.07G168100 Carya illinoinensis HOM05D001755 ORTHO05D001665 7.7e-19 96.3 54 85.2
CiPaw.08G054200 Carya illinoinensis HOM05D001755 ORTHO05D001665 7.7e-19 96.3 54 85.2
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.0e-18 95.9 53 84.9
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.0e-18 95.9 53 84.9
ClCG09G015900 Citrullus lanatus HOM05D001755 ORTHO05D001665 1.0e-18 95.9 54 83.3
CsaV3_7G007020 Cucumis sativus L. HOM05D001755 ORTHO05D001665 1.0e-18 95.9 54 83.3
Nn5g29940 Nelumbo nucifera HOM05D001755 ORTHO05D001665 1.0e-18 95.9 54 85.2
TAR381G0451 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.0e-18 95.9 54 85.2
CAN.G1658.7 Capsicum annuum HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 85.2
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 1.3e-18 95.5 53 83.0
Gohir.A03G175950 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 83.3
Gohir.D02G199750 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 83.3
Gorai.005G224400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 83.3
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 1.3e-18 95.5 53 84.9
MD08G1193000 Malus domestica HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 85.2
Prupe.1G527700 Prunus persica HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 85.2
SGA_v2.0_scaffold219G42570 Striga asiatica HOM05D001755 ORTHO05D001665 1.3e-18 95.5 54 85.2
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 1.7e-18 95.1 53 84.9
CiPaw.05G031100 Carya illinoinensis HOM05D001755 ORTHO05D001665 1.7e-18 95.1 54 83.3
Solyc04g076033.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.7e-18 95.1 53 84.9
Solyc12g087895.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.7e-18 95.1 53 84.9
ClCG00G003730 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.3e-18 94.7 54 83.3
ClCG08G011500 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.3e-18 94.7 54 83.3
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 2.3e-18 94.7 53 83.0
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 2.3e-18 94.7 53 83.0
Prupe.8G067700 Prunus persica HOM05D001755 ORTHO05D001665 2.3e-18 94.7 54 83.3
Sc26g0000250 Simmondsia chinensis HOM05D001755 ORTHO05D001665 2.3e-18 94.7 54 83.3
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 2.9e-18 94.4 53 83.0
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 2.9e-18 94.4 53 83.0
Oeu022087.1 Olea europaea HOM05D001755 ORTHO05D001665 2.9e-18 94.4 54 81.5
MD04G1047500 Malus domestica HOM05D001755 ORTHO05D001665 3.8e-18 94.0 54 79.6
SEGI_04003 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 3.8e-18 94.0 53 83.0
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 3.8e-18 94.0 53 79.2
Thecc.02G132000 Theobroma cacao HOM05D001755 ORTHO05D001665 3.8e-18 94.0 54 81.5
vmacro21312 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 3.8e-18 94.0 54 83.3
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 5.0e-18 93.6 53 83.0
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 5.0e-18 93.6 53 83.0
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 5.0e-18 93.6 53 84.9
Glyma.04G093000 Glycine max HOM05D001755 ORTHO05D001665 5.0e-18 93.6 54 83.3
Gohir.D05G267450 Gossypium hirsutum HOM05D001755 ORTHO05D001665 5.0e-18 93.6 54 83.3
MD15G1381800 Malus domestica HOM05D001755 ORTHO05D001665 5.0e-18 93.6 54 83.3
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 5.0e-18 93.6 53 83.0
Phvul.009G038300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 5.0e-18 93.6 54 83.3
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 5.0e-18 93.6 53 83.0
CiPaw.06G156900 Carya illinoinensis HOM05D001755 ORTHO05D001665 6.6e-18 93.2 54 81.5
Gorai.010G035900 Gossypium raimondii HOM05D001755 ORTHO05D001665 6.6e-18 93.2 53 83.0
Oeu049223.1 Olea europaea HOM05D001755 ORTHO05D001665 6.6e-18 93.2 54 83.3
Potri.002G103400 Populus trichocarpa HOM05D001755 ORTHO05D001665 6.6e-18 93.2 54 83.3
Potri.005G158000 Populus trichocarpa HOM05D001755 ORTHO05D001665 6.6e-18 93.2 54 83.3
Sed0003373 Sechium edule HOM05D001755 ORTHO05D001665 6.6e-18 93.2 54 81.5
LjContig00408g0004832 Lotus japonicus HOM05D001755 ORTHO05D001665 8.6e-18 92.8 54 83.3
Phvul.008G179600 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 8.6e-18 92.8 54 83.3
TPR.G18441 Trifolium pratense HOM05D001755 ORTHO05D001665 8.6e-18 92.8 54 83.3
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.5e-17 92.0 53 81.1
Gohir.A05G265200 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.5e-17 92.0 54 81.5
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.5e-17 92.0 53 81.1
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.5e-17 92.0 53 81.1
Manes.18G061200 Manihot esculenta HOM05D001755 ORTHO05D001665 1.5e-17 92.0 54 81.5
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.5e-17 92.0 51 84.3
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.5e-17 92.0 51 84.3
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 1.5e-17 92.0 53 83.0
SGA_v2.0_scaffold14G07146 Striga asiatica HOM05D001755 ORTHO05D001665 1.5e-17 92.0 53 81.1
vmacro04680 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 1.5e-17 92.0 54 81.5
ATR0022G040 Amborella trichopoda HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 81.5
arahy.Tifrunner.gnm1.ann1.KCV3PX Arachis hypogaea HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 81.5
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 1.9e-17 91.7 53 75.5
Duzib132G0573 Durio zibethinus HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 79.6
Glyma.02G212300 Glycine max HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 81.5
Glyma.14G180100 Glycine max HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 81.5
Phvul.006G203500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 81.5
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.9e-17 91.7 54 79.6
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 2.5e-17 91.3 51 84.3
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 2.5e-17 91.3 53 81.1
FAN08G0378 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.5e-17 91.3 54 81.5
Glyma.08G069600 Glycine max HOM05D001755 ORTHO05D001665 2.5e-17 91.3 54 83.3
Manes.02G146800 Manihot esculenta HOM05D001755 ORTHO05D001665 2.5e-17 91.3 54 81.5
Psat2g065840 Pisum sativum HOM05D001755 ORTHO05D001665 2.5e-17 91.3 54 81.5
RcHm_v2.0_Chr7g0237501 Rosa chinensis HOM05D001755 ORTHO05D001665 2.5e-17 91.3 54 81.5
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 2.5e-17 91.3 53 79.2
arahy.Tifrunner.gnm1.ann1.IVYM6W Arachis hypogaea HOM05D001755 ORTHO05D001665 3.3e-17 90.9 54 81.5
Phvul.002G211300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 3.3e-17 90.9 54 83.3
Ciclev10006528m.g Citrus clementina HOM05D001755 ORTHO05D001665 5.5e-17 90.1 54 77.8
Glyma.07G181100 Glycine max HOM05D001755 ORTHO05D001665 5.5e-17 90.1 54 83.3
Potri.017G047932 Populus trichocarpa HOM05D001755 ORTHO05D001665 5.5e-17 90.1 54 77.8
Lj1g0001104 Lotus japonicus HOM05D001755 ORTHO05D001665 7.2e-17 89.7 54 79.6
Lalb_Chr04g0252981 Lupinus albus HOM05D001755 ORTHO05D001665 7.2e-17 89.7 54 77.8
Sed0017446 Sechium edule HOM05D001755 ORTHO05D001665 7.2e-17 89.7 54 81.5
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 7.2e-17 89.7 51 82.4
Glyma.15G056700 Glycine max HOM05D001755 ORTHO05D001665 9.5e-17 89.4 54 79.6
Hma1.2p1_0010F.1_g007000 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 9.5e-17 89.4 53 77.4
Lalb_Chr11g0065111 Lupinus albus HOM05D001755 ORTHO05D001665 9.5e-17 89.4 54 79.6
Manes.07G036900 Manihot esculenta HOM05D001755 ORTHO05D001665 9.5e-17 89.4 54 77.8
Manes.10G102000 Manihot esculenta HOM05D001755 ORTHO05D001665 9.5e-17 89.4 54 77.8
Medtr5g065670 Medicago truncatula HOM05D001755 ORTHO05D001665 9.5e-17 89.4 53 81.1
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 1.2e-16 89.0 54 77.8
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 1.2e-16 89.0 53 75.5
Lj4g0016585 Lotus japonicus HOM05D001755 ORTHO05D001665 1.2e-16 89.0 54 79.6
Lalb_Chr08g0242371 Lupinus albus HOM05D001755 ORTHO05D001665 1.6e-16 88.6 54 77.8
Sed0017055 Sechium edule HOM05D001755 ORTHO05D001665 2.1e-16 88.2 54 77.8
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.8e-16 87.8 53 77.4
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 3.6e-16 87.4 51 80.4
Actinidia33109 Actinidia chinensis HOM05D001755 ORTHO05D001665 4.7e-16 87.0 51 80.4
DCAR_029187 Daucus carota HOM05D001755 ORTHO05D001665 4.7e-16 87.0 54 79.6
Glyma.06G094800 Glycine max HOM05D001755 ORTHO05D001665 4.7e-16 87.0 57 77.2
HanXRQChr05g0163291 Helianthus annuus HOM05D001755 ORTHO05D001665 4.7e-16 87.0 54 75.9
HanXRQChr05g0163551 Helianthus annuus HOM05D001755 ORTHO05D001665 4.7e-16 87.0 54 75.9
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 4.7e-16 87.0 51 80.4
Lalb_Chr17g0344421 Lupinus albus HOM05D001755 ORTHO05D001665 6.1e-16 86.7 54 81.5
CSS0016051 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.8e-15 85.1 66 68.2
Migut.L01932 Erythranthe guttata HOM05D001755 ORTHO05D001665 2.3e-15 84.7 54 75.9
BraA02t09253Z Brassica rapa HOM05D001755 ORTHO05D001665 5.2e-15 83.6 54 72.2
Lalb_Chr05g0217661 Lupinus albus HOM05D001755 ORTHO05D001665 5.2e-15 83.6 54 75.9
Oeu060039.1 Olea europaea HOM05D001755 ORTHO05D001665 5.2e-15 83.6 52 76.9
BcaC03g18258 Brassica carinata HOM05D001755 ORTHO05D001665 6.8e-15 83.2 54 72.2
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 2.0e-14 81.6 45 84.4
Thhalv10005432m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 3.4e-14 80.9 54 70.4
Nitab4.5_0001264g0230 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.4e-14 80.5 92 51.1
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 5.7e-14 80.1 46 80.4
Sabra05G0120800 Salix brachista HOM05D001755 ORTHO05D001665 9.8e-14 79.3 76 57.9
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.7e-13 78.6 53 66.0
Carub.0008s2514 Capsella rubella HOM05D001755 ORTHO05D001665 3.7e-13 77.4 54 64.8
Carub.0006s0803 Capsella rubella HOM05D001755 ORTHO05D001665 1.1e-12 75.9 55 67.3
CARHR203920 Cardamine hirsuta HOM05D001755 ORTHO05D001665 1.1e-12 75.9 55 67.3
CARHR278280 Cardamine hirsuta HOM05D001755 ORTHO05D001665 1.1e-12 75.9 54 63.0
Carub.0008s0991 Capsella rubella HOM05D001755 ORTHO05D001665 1.8e-12 75.1 54 68.5
Thhalv10015558m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 1.8e-12 75.1 55 67.3
BcaC01g06905 Brassica carinata HOM05D001755 ORTHO05D001665 2.4e-12 74.7 51 66.7
C03p61950 Brassica napus HOM05D001755 ORTHO05D001665 2.4e-12 74.7 51 66.7
BolC3t18454H Brassica oleracea HOM05D001755 ORTHO05D001665 2.4e-12 74.7 51 66.7
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.4e-12 74.7 41 82.9
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 5.4e-12 73.6 42 81.0
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 7.0e-12 73.2 41 82.9
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 7.0e-12 73.2 41 80.5
TAR628G0605 Trochodendron aralioides HOM05D001755 ORTHO05D001665 7.0e-12 73.2 41 82.9
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 1.2e-11 72.4 43 76.7
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 2.7e-11 71.2 41 80.5
Aa31sc34G40 Aethionema arabicum HOM05D001755 ORTHO05D001665 3.5e-11 70.9 47 66.0
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 3.5e-11 70.9 41 80.5
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 3.5e-11 70.9 41 80.5
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 4.5e-11 70.5 41 80.5
BraA10t44831Z Brassica rapa HOM05D001755 ORTHO05D001665 7.8e-11 69.7 54 61.1
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 7.8e-11 69.7 41 78.0
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 1.0e-10 69.3 41 78.0
FAN13G1260 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.7e-10 68.6 41 78.0
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 2.3e-10 68.2 41 80.5
Ciclev10003720m.g Citrus clementina HOM05D001755 ORTHO05D001665 2.9e-10 67.8 41 78.0
arahy.Tifrunner.gnm1.ann1.0E4ZKW Arachis hypogaea HOM05D001755 ORTHO05D001665 5.0e-10 67.0 41 75.6
arahy.Tifrunner.gnm1.ann1.FV0XI2 Arachis hypogaea HOM05D001755 ORTHO05D001665 5.0e-10 67.0 41 75.6
BcaB08g37202 Brassica carinata HOM05D001755 ORTHO05D001665 5.0e-10 67.0 53 60.4
BolC9t59551H Brassica oleracea HOM05D001755 ORTHO05D001665 5.0e-10 67.0 53 60.4
CDE10G0731 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 5.0e-10 67.0 43 67.4
Aqoxy6G01463 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 8.6e-10 66.2 41 75.6
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 1.1e-09 65.9 44 70.5
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 1.2e-08 62.4 41 70.7
FAN18G3889 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.1e-08 61.6 36 77.8
unitig_62.g23628 Utricularia gibba HOM05D001755 ORTHO05D001665 3.1e-07 57.8 41 63.4
BcaB07g29738 Brassica carinata HOM05D001755 ORTHO05D001665 4.0e-07 57.4 41 61.0
Aa31LG3G17530 Aethionema arabicum HOM05D001755 ORTHO05D001665 6.8e-07 56.6 41 58.5
unitig_699.g19865 Utricularia gibba HOM05D001755 ORTHO05D001665 4.4e-06 53.9 41 58.5
Nn3g20651 Nelumbo nucifera HOM05D004468 ORTHO05D011136 9.8e-06 52.8 33 69.7


User provided reference genes

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