Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 2.8e-112 408.7 213 100.0
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 9.9e-110 400.2 213 98.1
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 7.9e-99 364.0 216 91.7
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 5.8e-78 294.7 211 78.2
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 7.9e-75 284.3 210 71.9
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.1e-68 263.8 221 67.0
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 3.3e-65 252.3 213 68.1
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 1.2e-33 147.5 212 45.8
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 6.3e-32 141.7 215 42.8
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 2.4e-31 139.8 212 42.5
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 2.8e-27 126.3 227 39.6
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 1.8e-26 123.6 211 41.2
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.0e-26 122.9 228 38.6
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 5.2e-26 122.1 165 43.6
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 6.8e-26 121.7 209 40.7
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 1.2e-25 120.9 207 39.1
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 7.5e-25 118.2 210 37.6
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.7e-24 117.1 216 36.6
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 1.7e-24 117.1 165 43.0
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 2.9e-24 116.3 215 40.9
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 1.1e-23 114.4 229 37.1
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.4e-23 112.1 209 37.3
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 7.0e-23 111.7 136 44.9
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 4.6e-22 109.0 204 36.3
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 5.9e-22 108.6 163 40.5
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 1.3e-21 107.5 163 39.9
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 3.9e-21 105.9 163 39.3
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 6.6e-21 105.1 223 35.9
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 8.6e-21 104.8 145 42.8
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.1e-20 104.4 117 47.9
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 1.1e-20 104.4 147 42.2
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 1.1e-20 104.4 203 35.5
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.5e-20 104.0 194 40.7
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 5.6e-20 102.1 213 34.7
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 8.0e-19 98.2 200 34.5
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.0e-18 97.8 178 38.8
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 1.4e-18 97.4 153 42.5
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 3.1e-18 96.3 175 38.3
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 5.2e-18 95.5 135 42.2
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 5.2e-18 95.5 164 40.2
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 8.9e-18 94.7 159 39.0
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 2.0e-17 93.6 164 37.2
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 3.4e-17 92.8 118 44.1
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 5.8e-17 92.0 129 41.9
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 7.5e-17 91.7 202 33.7
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 9.8e-17 91.3 179 36.3
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.3e-16 90.9 203 34.5
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.7e-16 90.5 188 35.6
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 2.9e-16 89.7 203 32.0
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 6.4e-16 88.6 139 38.1
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 8.3e-16 88.2 124 41.9
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 1.4e-15 87.4 161 37.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 2.4e-15 86.7 118 39.8
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 5.4e-15 85.5 205 33.2
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 7.0e-15 85.1 215 30.7
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 7.0e-15 85.1 122 38.5
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 7.0e-15 85.1 144 39.6
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 7.0e-15 85.1 210 32.4
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 2.0e-14 83.6 101 47.5
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 3.5e-14 82.8 111 40.5
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 4.6e-14 82.4 157 36.3
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 7.8e-14 81.6 216 33.3
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 2.3e-13 80.1 146 38.4
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 2.3e-13 80.1 227 32.2
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 3.9e-13 79.3 128 39.1
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 5.0e-13 79.0 209 31.6
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 5.0e-13 79.0 224 33.9
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 8.6e-13 78.2 209 34.9
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 1.1e-12 77.8 176 29.0
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.1e-12 77.8 180 33.3
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.9e-12 77.0 128 38.3
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 2.5e-12 76.6 145 33.8
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 2.5e-12 76.6 183 32.8
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 7.3e-12 75.1 161 33.5
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 1.2e-11 74.3 213 29.1
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 2.8e-11 73.2 180 30.6
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 4.7e-11 72.4 174 33.9
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.1e-10 71.2 64 56.2
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 1.8e-10 70.5 213 28.2
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 4.0e-10 69.3 99 43.4
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 5.2e-10 68.9 133 33.8
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 5.2e-10 68.9 121 34.7
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 8.9e-10 68.2 213 27.7
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 1.2e-09 67.8 214 28.5
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 1.2e-09 67.8 214 28.5
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 1.2e-09 67.8 206 31.1
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 1.2e-09 67.8 215 29.3
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 2.6e-09 66.6 103 39.8
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 7.5e-09 65.1 132 37.1
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 1.3e-08 64.3 114 30.7
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 4.9e-08 62.4 74 51.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 8.3e-08 61.6 109 33.0
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.9e-07 60.5 90 43.3
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 1.9e-07 60.5 188 28.7
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.9e-07 60.5 135 30.4
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 3.2e-07 59.7 167 26.3
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 5.4e-07 58.9 123 33.3
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 7.1e-07 58.5 136 29.4
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 7.1e-07 58.5 106 32.1
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 9.2e-07 58.2 120 33.3
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 1.2e-06 57.8 206 28.2
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.2e-06 57.8 167 26.3
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.1e-06 57.0 174 29.3
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 2.1e-06 57.0 131 29.0
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 3.5e-06 56.2 102 38.2
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 3.5e-06 56.2 137 27.0
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 3.5e-06 56.2 153 26.8
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 4.6e-06 55.8 101 34.7
Os09g0468900 Oryza sativa ssp. japonica HOM05D026744 ORTHO05D012887 4.6e-06 55.8 125 34.4
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 4.6e-06 55.8 120 32.5


User provided reference genes

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