Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 2.5e-136 488.8 251 100.0
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 5.2e-134 481.1 251 97.6
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.2e-125 453.4 252 92.9
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.7e-108 395.2 252 83.3
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 1.1e-78 297.4 256 62.1
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 1.9e-75 286.6 254 59.8
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 1.6e-74 283.5 259 59.1
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 2.7e-74 282.7 156 88.5
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 1.5e-69 266.9 252 56.7
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 5.7e-64 248.4 250 54.8
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 7.4e-64 248.1 252 54.8
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 9.7e-64 247.7 248 52.4
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 1.8e-62 243.4 259 52.5
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 1.2e-61 240.7 258 53.9
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 2.0e-61 240.0 257 54.9
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 7.7e-61 238.0 261 53.6
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 7.7e-61 238.0 299 49.2
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 1.0e-60 237.7 253 54.2
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.3e-60 237.3 259 50.2
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.4e-59 233.8 259 49.0
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 9.4e-59 231.1 247 51.0
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 1.6e-58 230.3 260 49.6
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 2.7e-58 229.6 251 50.2
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 4.6e-58 228.8 250 50.8
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 1.4e-57 227.3 250 50.4
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 3.0e-57 226.1 249 50.2
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.0e-56 223.4 250 49.6
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 4.3e-56 222.2 250 50.4
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 1.7e-55 220.3 247 52.6
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.7e-55 220.3 246 48.8
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 5.3e-54 215.3 249 47.8
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 2.6e-53 213.0 249 49.4
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.5e-53 212.2 253 49.0
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 1.0e-52 211.1 248 48.8
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 1.3e-52 210.7 256 48.0
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 8.5e-52 208.0 261 48.7
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 8.5e-52 208.0 370 38.4
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.1e-51 207.6 261 48.7
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 2.5e-51 206.5 273 46.9
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.2e-51 206.1 160 75.0
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 7.2e-51 204.9 161 75.2
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 1.2e-50 204.1 260 48.1
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 2.1e-50 203.4 251 45.8
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 4.7e-50 202.2 269 46.1
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 4.7e-50 202.2 250 46.8
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 6.1e-50 201.8 262 46.6
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.0e-49 201.1 277 45.5
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.0e-49 201.1 277 45.5
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 3.9e-49 199.1 252 47.6
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 5.1e-49 198.7 260 45.4
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 5.1e-49 198.7 251 46.6
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 6.7e-49 198.4 250 46.4
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.3e-47 194.1 277 44.4
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 2.2e-47 193.4 273 43.6
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 2.2e-47 193.4 262 45.0
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 6.3e-47 191.8 235 49.8
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 1.1e-46 191.0 243 46.9
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 2.6e-45 186.4 312 41.7
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 5.5e-43 178.7 214 50.5
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 3.6e-42 176.0 257 39.7
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.0e-41 174.5 170 52.9
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 8.8e-41 171.4 259 42.5
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.0e-40 170.2 154 55.2
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 2.6e-40 169.9 245 43.3
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 2.6e-40 169.9 250 41.2
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 5.7e-40 168.7 206 47.1
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 2.8e-39 166.4 245 42.0
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 4.8e-39 165.6 245 42.9
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 6.3e-39 165.2 245 41.2
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 6.3e-39 165.2 247 42.9
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 6.3e-39 165.2 258 42.6
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 1.1e-38 164.5 245 40.8
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 4.1e-38 162.5 259 39.0
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 1.6e-37 160.6 184 52.2
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 2.7e-37 159.8 173 46.8
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 3.5e-37 159.5 172 46.5
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 5.9e-37 158.7 245 41.2
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.7e-36 157.1 257 40.5
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 1.7e-36 157.1 255 42.4
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 2.2e-36 156.8 245 40.0
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 2.2e-36 156.8 246 40.7
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 5.0e-36 155.6 245 39.6
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 5.0e-36 155.6 245 39.6
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 3.6e-34 149.4 246 42.7
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.4e-33 147.5 245 39.2
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 1.5e-32 144.1 252 39.7
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 3.4e-32 142.9 168 51.2
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 5.7e-32 142.1 272 34.2
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 2.8e-31 139.8 224 36.6
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 1.4e-30 137.5 233 41.2
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 9.1e-30 134.8 239 35.6
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 2.7e-29 133.3 193 37.8
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.0e-28 131.3 106 57.5
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 2.9e-28 129.8 261 36.0
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 2.9e-28 129.8 215 37.7
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 3.0e-25 119.8 178 39.9
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 5.2e-25 119.0 237 34.2
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 6.8e-25 118.6 164 46.3
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 8.3e-23 111.7 256 33.6
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 1.8e-22 110.5 112 49.1
Peaxi162Scf00172g00068 Petunia axillaris HOM05D007225 ORTHO05D009062 4.1e-22 109.4 83 75.9
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.6e-21 107.5 257 32.7
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 1.6e-21 107.5 264 30.7
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 3.8e-20 102.8 107 47.7
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 1.5e-19 100.9 93 54.8
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 1.1e-11 74.7 88 40.9
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 1.9e-11 73.9 153 32.7
Zm00001eb434540 Zea mays HOM05D007225 ORTHO05D009062 6.8e-09 65.5 93 40.9


User provided reference genes

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