Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 8.2e-191 670.2 339 100.0
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 3.4e-189 664.8 339 99.1
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 6.9e-182 640.6 333 97.0
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 4.6e-178 627.9 330 94.8
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.7e-172 609.4 333 91.3
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 1.1e-168 596.7 333 88.6
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.3e-156 556.6 329 82.7
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 1.9e-155 552.7 330 80.0
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 3.2e-155 552.0 330 80.9
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.2e-154 550.1 328 81.4
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.2e-154 550.1 330 80.3
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.6e-154 548.5 328 81.1
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 5.2e-153 544.7 330 79.1
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 6.7e-153 544.3 329 80.2
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.2e-152 543.5 329 80.2
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.2e-152 543.5 327 80.4
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 7.5e-152 540.8 329 79.6
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 2.2e-151 539.3 332 79.2
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.8e-151 538.1 333 78.4
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 4.8e-151 538.1 330 79.4
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 6.3e-151 537.7 329 79.9
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 6.3e-151 537.7 330 78.2
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 8.2e-151 537.3 328 80.5
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.8e-150 536.2 330 77.9
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.8e-150 536.2 330 77.9
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 2.4e-150 535.8 338 76.3
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 2.4e-150 535.8 330 77.6
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 2.4e-150 535.8 337 76.9
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 3.1e-150 535.4 330 78.5
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 5.3e-150 534.6 329 78.7
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 7.0e-150 534.3 331 78.2
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 9.1e-150 533.9 329 78.1
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 2.0e-149 532.7 330 77.9
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 2.7e-149 532.3 329 78.7
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 3.5e-149 531.9 327 79.2
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 4.5e-149 531.6 327 76.8
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 5.9e-149 531.2 329 77.5
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 5.9e-149 531.2 329 79.0
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 7.7e-149 530.8 329 77.5
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.0e-148 530.4 329 77.8
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 1.3e-148 530.0 332 77.4
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 3.8e-148 528.5 333 76.9
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.8e-148 528.5 333 77.2
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 5.0e-148 528.1 333 77.5
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 5.0e-148 528.1 333 77.5
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 6.5e-148 527.7 329 77.5
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 8.5e-148 527.3 328 76.8
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 1.5e-147 526.6 330 77.3
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 2.5e-147 525.8 332 75.6
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 5.5e-147 524.6 329 77.8
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 7.2e-147 524.2 329 78.1
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 7.2e-147 524.2 329 78.1
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.2e-146 523.5 332 77.1
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.2e-146 523.5 327 78.3
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.2e-146 523.5 361 71.2
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 1.2e-146 523.5 330 75.2
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.6e-146 523.1 327 77.4
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.6e-146 523.1 330 76.1
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.6e-146 523.1 330 75.5
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 2.1e-146 522.7 325 76.6
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 3.6e-146 521.9 330 75.2
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 4.7e-146 521.5 327 77.1
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 4.7e-146 521.5 329 77.5
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.7e-146 521.5 347 75.5
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 6.1e-146 521.2 329 77.8
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 6.1e-146 521.2 329 76.9
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.4e-145 520.0 327 76.5
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 1.4e-145 520.0 332 76.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.8e-145 519.6 329 76.0
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.3e-145 519.2 333 76.0
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 2.3e-145 519.2 360 70.8
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 3.0e-145 518.8 402 66.9
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 4.0e-145 518.5 331 75.8
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 5.2e-145 518.1 331 75.8
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 6.8e-145 517.7 329 76.0
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 1.5e-144 516.5 328 75.3
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 3.4e-144 515.4 330 74.5
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.7e-143 511.9 333 73.3
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 8.3e-143 510.8 324 77.2
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 1.4e-142 510.0 331 74.3
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 2.4e-142 509.2 313 77.3
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 2.4e-142 509.2 332 73.8
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 7.0e-142 507.7 327 75.2
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 4.5e-141 505.0 326 73.6
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-140 502.3 329 76.6
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 5.0e-140 501.5 329 73.9
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 6.5e-140 501.1 327 74.6
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 6.1e-138 494.6 351 68.4
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.2e-137 491.5 333 71.5
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.2e-136 490.3 329 73.3
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.4e-134 483.4 317 73.2
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 8.9e-129 464.2 330 67.9
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.4e-128 462.2 333 67.9
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 2.7e-125 452.6 329 68.4
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 2.8e-122 442.6 285 73.7
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 9.8e-120 434.1 354 63.8
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.5e-115 417.5 284 72.5
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 1.2e-114 417.2 330 63.6
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 3.6e-114 415.6 347 65.4
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.4e-110 401.7 335 60.3
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 6.0e-109 398.3 328 61.0
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 5.1e-108 395.2 269 69.9
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 2.0e-104 383.3 326 59.2
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 4.6e-101 372.1 328 57.3
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 1.5e-99 367.1 337 57.6
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 9.6e-99 364.4 225 77.8
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 9.0e-97 357.8 328 55.8
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.8e-95 352.4 223 75.3
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 4.6e-93 345.5 332 53.6
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-92 344.4 330 50.9
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 5.6e-91 338.6 226 74.3
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 9.6e-91 337.8 330 50.6
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 9.6e-91 337.8 333 52.9
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 6.2e-90 335.1 334 52.4
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 6.2e-90 335.1 330 50.6
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-89 333.2 328 51.5
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-88 330.5 328 50.6
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-87 326.2 341 49.3
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 3.8e-87 325.9 330 50.3
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 6.4e-87 325.1 328 50.0
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-86 323.2 329 50.5
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 3.2e-86 322.8 328 49.1
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 4.2e-86 322.4 341 48.7
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 3.9e-84 315.8 233 70.4
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 6.7e-84 315.1 328 50.9
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 3.1e-81 306.2 328 48.2
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-78 297.4 329 47.7
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.3e-76 290.8 326 46.9
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-73 280.4 330 45.5
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 2.0e-72 276.9 148 91.2
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 6.0e-69 265.4 264 51.1
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 9.7e-59 231.5 148 74.3
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 6.3e-58 228.8 180 66.7
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.1e-57 228.0 140 76.4
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-57 226.9 217 51.6
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 3.9e-52 209.5 216 53.2
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 9.7e-51 204.9 173 64.2
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-47 193.7 194 48.5
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-45 188.0 177 49.2
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 6.1e-45 185.7 325 39.7
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 6.7e-44 182.2 125 71.2
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.7e-42 176.4 105 74.3
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 1.4e-41 174.5 136 63.2
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 6.7e-36 155.6 157 52.2
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.3e-31 141.4 369 31.2
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 8.0e-29 132.1 358 28.8
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 8.8e-28 128.6 78 73.1
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 1.2e-27 128.3 287 31.4
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 7.7e-24 115.5 68 69.1
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.3e-23 114.0 353 28.0
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 8.6e-23 112.1 325 28.0
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 8.0e-21 105.5 98 52.0
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.4e-19 100.1 365 28.2
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 4.1e-17 93.2 332 28.6
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 9.2e-17 92.0 61 73.8
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 3.5e-16 90.1 69 65.2
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 5.0e-15 86.3 56 76.8
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 4.7e-13 79.7 149 35.6
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.3e-12 77.4 94 45.7
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.0e-12 76.6 143 35.7
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.5e-11 72.4 45 71.1
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 2.2e-10 70.9 92 43.5
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 2.2e-10 70.9 92 44.6
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 7.0e-09 65.9 46 71.7
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 2.7e-08 63.9 50 66.0
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 2.7e-08 63.9 46 71.7
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 3.5e-08 63.5 145 31.7


User provided reference genes

Program Settings