Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 1.8e-82 309.3 171 100.0
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 2.1e-70 269.2 156 96.2
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.5e-68 263.1 156 94.2
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.3e-67 260.0 156 92.3
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 2.9e-67 258.8 156 91.0
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 1.1e-66 256.9 157 92.4
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 3.5e-65 251.9 157 91.7
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 5.4e-58 228.0 153 83.0
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 2.7e-57 225.7 152 82.2
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 7.8e-57 224.2 153 79.7
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 2.3e-56 222.6 160 77.5
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 2.3e-56 222.6 173 76.9
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 6.6e-56 221.1 161 77.6
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 6.6e-56 221.1 151 80.8
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 6.6e-56 221.1 150 84.0
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 8.6e-56 220.7 152 81.6
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 1.1e-55 220.3 153 82.4
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.9e-55 219.5 152 81.6
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 1.9e-55 219.5 154 81.2
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 2.5e-55 219.2 154 78.6
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 3.3e-55 218.8 154 80.5
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 4.3e-55 218.4 152 80.3
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 5.6e-55 218.0 152 80.3
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 2.1e-54 216.1 148 78.4
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 2.8e-54 215.7 148 79.7
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 3.6e-54 215.3 152 80.3
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 4.7e-54 214.9 148 78.4
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 6.2e-54 214.5 152 76.3
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 8.1e-54 214.2 148 81.8
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 1.1e-53 213.8 153 78.4
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.1e-53 213.8 153 78.4
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 1.4e-53 213.4 143 83.2
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 1.8e-53 213.0 150 79.3
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 2.3e-53 212.6 151 78.8
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 2.3e-53 212.6 151 78.8
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 3.1e-53 212.2 152 78.3
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 3.1e-53 212.2 151 79.5
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 6.8e-53 211.1 148 78.4
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 8.9e-53 210.7 147 81.0
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 8.9e-53 210.7 147 81.0
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 8.9e-53 210.7 147 78.2
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.2e-52 210.3 152 76.3
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 1.5e-52 209.9 149 77.9
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 1.5e-52 209.9 173 71.7
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.0e-52 209.5 147 80.3
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 2.6e-52 209.1 148 77.0
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.8e-52 208.0 147 79.6
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.8e-52 208.0 147 79.6
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 5.8e-52 208.0 152 77.0
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 1.3e-51 206.8 153 78.4
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 1.3e-51 206.8 154 74.7
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.7e-51 206.5 153 75.8
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 2.2e-51 206.1 153 75.2
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 2.2e-51 206.1 148 78.4
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 2.9e-51 205.7 145 79.3
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 6.4e-51 204.5 148 75.7
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 6.4e-51 204.5 149 75.2
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 6.4e-51 204.5 148 76.4
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 6.4e-51 204.5 148 76.4
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 8.3e-51 204.1 148 75.7
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 8.3e-51 204.1 148 75.7
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 8.3e-51 204.1 148 76.4
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 1.1e-50 203.8 148 75.7
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.1e-50 203.8 139 80.6
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 1.9e-50 203.0 148 75.7
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 1.9e-50 203.0 165 72.1
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 2.4e-50 202.6 148 75.0
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 3.2e-50 202.2 148 75.0
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 4.1e-50 201.8 148 75.0
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 4.1e-50 201.8 148 75.0
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 7.1e-50 201.1 148 75.0
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 9.2e-50 200.7 131 83.2
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 1.2e-49 200.3 148 75.0
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 2.1e-49 199.5 148 74.3
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 2.7e-49 199.1 155 73.5
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 6.0e-49 198.0 154 72.7
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 1.3e-48 196.8 143 75.5
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 1.3e-48 196.8 143 75.5
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.3e-48 196.8 151 73.5
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 2.3e-48 196.1 148 73.6
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 8.6e-48 194.1 138 76.1
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 3.3e-47 192.2 147 70.1
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 4.3e-47 191.8 154 70.8
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 4.3e-47 191.8 154 70.8
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 5.6e-47 191.4 154 72.1
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.1e-46 189.5 146 70.5
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 3.4e-44 182.2 150 66.7
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 7.6e-44 181.0 148 70.9
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.3e-43 180.3 149 67.8
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 5.4e-42 174.9 224 52.2
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 7.1e-42 174.5 153 68.0
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 1.2e-41 173.7 153 68.0
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 1.6e-41 173.3 153 69.9
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 3.5e-41 172.2 156 66.7
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 1.3e-40 170.2 148 65.5
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 3.6e-38 162.2 151 63.6
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 4.8e-38 161.8 149 65.8
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 5.3e-37 158.3 144 63.2
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 6.9e-37 157.9 111 80.2
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 1.2e-36 157.1 129 72.1
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 3.4e-36 155.6 112 78.6
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 2.2e-35 152.9 157 52.2
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 3.8e-35 152.1 143 56.6
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 4.9e-35 151.8 155 60.6
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 8.4e-35 151.0 153 62.7
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 9.3e-34 147.5 111 76.6
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 2.7e-33 146.0 148 60.8
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 6.6e-32 141.4 117 65.8
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 8.7e-32 141.0 117 68.4
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.5e-31 140.2 172 55.2
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 4.3e-31 138.7 118 67.8
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 9.6e-31 137.5 110 70.9
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 4.8e-30 135.2 159 55.3
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 4.8e-30 135.2 157 55.4
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 4.8e-30 135.2 104 71.2
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 3.4e-28 129.0 145 46.2
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 7.6e-28 127.9 155 54.2
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 7.6e-28 127.9 155 54.2
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 1.9e-26 123.2 152 53.3
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.2e-26 122.5 91 75.8
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 2.8e-22 109.4 81 76.5
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 5.3e-21 105.1 126 54.8
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 1.3e-16 90.5 65 75.4
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 2.8e-14 82.8 155 38.7
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 1.0e-11 74.3 151 32.5
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 5.5e-10 68.6 54 66.7
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.6e-09 67.0 47 70.2
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 2.1e-09 66.6 127 40.9
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 8.7e-08 61.2 45 68.9
Oeu011770.1 Olea europaea HOM05D004115 ORTHO05D005004 2.8e-06 56.2 42 66.7


User provided reference genes

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