Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.8e-216 755.7 640 100.0
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.0e-214 749.6 640 99.5
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 2.1e-200 703.0 629 97.1
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 3.0e-186 656.0 640 92.2
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 4.3e-177 625.5 635 89.4
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.6e-171 607.1 635 88.3
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 2.4e-167 593.2 645 86.4
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 2.4e-167 593.2 645 86.4
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 1.2e-121 441.4 641 76.3
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 1.6e-102 377.9 627 71.6
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 3.9e-101 373.2 636 71.1
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 2.3e-93 347.4 652 69.0
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 2.8e-91 340.5 634 68.0
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 3.1e-90 337.0 647 68.5
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 9.0e-90 335.5 645 68.1
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 1.2e-89 335.1 644 68.2
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 3.4e-89 333.6 623 70.3
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.5e-89 333.2 654 69.1
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.2e-88 330.9 621 69.9
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 3.8e-88 330.1 654 69.0
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.2e-87 327.0 645 68.4
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 7.1e-87 325.9 644 66.6
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 9.3e-87 325.5 623 70.8
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 9.3e-87 325.5 637 68.3
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.9e-85 320.1 606 69.0
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.1e-82 312.0 623 68.2
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.8e-82 311.2 623 69.7
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 9.0e-82 308.9 623 68.9
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 9.0e-82 308.9 616 69.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 7.6e-81 305.8 649 66.6
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.7e-80 304.7 628 70.5
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 2.9e-80 303.9 646 66.4
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.9e-80 303.9 627 70.0
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 8.4e-80 302.4 624 68.4
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.1e-79 302.0 616 69.6
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 3.2e-79 300.4 628 68.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 7.1e-79 299.3 648 66.5
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.6e-78 298.1 623 69.0
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 2.7e-78 297.4 630 68.1
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 7.9e-78 295.8 656 65.1
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 7.9e-78 295.8 622 68.3
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 7.9e-78 295.8 649 65.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.3e-77 295.0 648 65.4
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.3e-77 295.0 643 66.3
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 1.8e-77 294.7 623 67.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.0e-77 293.9 644 66.3
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 3.9e-77 293.5 649 66.6
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.1e-77 293.1 643 66.1
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.1e-76 292.0 638 66.9
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.5e-76 291.6 625 67.5
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.5e-76 291.6 622 67.8
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 4.3e-76 290.0 624 67.0
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 1.6e-75 288.1 627 67.6
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 6.3e-75 286.2 622 66.7
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.8e-74 284.6 643 67.2
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.8e-74 284.6 618 68.4
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.4e-74 284.3 641 65.1
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 4.1e-74 283.5 645 65.4
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 2.6e-73 280.8 641 64.9
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.4e-73 280.4 633 67.5
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.4e-73 280.4 633 67.5
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.9e-72 277.3 648 67.0
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 6.5e-72 276.2 650 64.6
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 6.5e-72 276.2 645 65.6
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.5e-71 274.2 617 66.8
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.7e-70 270.8 635 65.4
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 4.6e-70 270.0 642 64.5
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 6.1e-70 269.6 648 64.5
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 7.9e-70 269.2 613 66.4
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.8e-69 268.1 645 64.8
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 3.9e-69 266.9 646 63.9
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 5.1e-69 266.5 646 63.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 5.1e-69 266.5 621 68.4
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.1e-68 265.4 618 66.5
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 1.1e-68 265.4 256 56.2
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.9e-68 264.6 652 63.8
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 3.7e-67 260.4 642 63.9
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 1.1e-66 258.8 645 65.1
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.8e-66 258.1 580 69.0
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.3e-66 256.5 615 66.5
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 5.3e-66 256.5 627 67.5
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.2e-65 255.4 628 66.4
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 1.5e-65 255.0 638 66.3
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 7.7e-65 252.7 644 62.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.9e-64 250.8 643 63.1
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 3.8e-64 250.4 624 68.1
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 4.2e-63 246.9 589 68.4
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 5.5e-63 246.5 620 63.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.0e-61 242.3 618 67.0
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.5e-60 238.4 650 64.3
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 7.7e-57 226.1 624 53.4
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 6.1e-54 216.5 622 64.5
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.5e-52 211.8 641 59.8
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 4.4e-52 210.3 623 65.2
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.8e-51 207.6 260 47.7
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 2.6e-49 201.1 651 60.8
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 2.6e-49 201.1 626 62.0
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.2e-48 198.0 621 63.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.0e-45 189.1 622 61.7
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.0e-45 189.1 614 42.2
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.1e-44 185.7 264 47.3
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 7.5e-44 183.0 650 59.2
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.8e-43 180.3 615 61.8
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.8e-42 178.3 246 44.7
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.5e-41 173.7 633 63.0
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 4.5e-41 173.7 627 60.1
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.1e-39 169.1 632 61.2
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 7.2e-39 166.4 635 61.3
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 9.4e-39 166.0 634 62.5
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.6e-38 165.2 636 61.2
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 2.1e-38 164.9 622 60.6
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.7e-38 164.5 632 62.2
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 3.7e-35 154.1 638 61.3
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 8.3e-35 152.9 224 69.2
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-33 149.1 634 61.7
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.7e-32 145.2 633 61.3
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.5e-31 142.1 640 60.5
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.9e-31 141.7 634 60.7
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.9e-31 141.7 239 43.1
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 2.1e-30 138.3 241 39.4
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 6.1e-30 136.7 439 77.2
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 8.0e-30 136.3 614 59.9
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.8e-29 135.2 626 62.1
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 3.0e-29 134.4 613 61.3
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 5.2e-29 133.7 625 59.4
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-28 132.5 615 61.0
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.2e-28 132.5 615 61.0
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 9.8e-28 129.4 632 60.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 3.7e-27 127.5 619 59.3
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 3.7e-27 127.5 616 61.5
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 8.3e-27 126.3 616 61.5
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 7.0e-26 123.2 623 58.4
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 3.5e-25 120.9 598 60.9
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 7.7e-25 119.8 609 59.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.1e-23 115.9 632 57.9
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 8.0e-22 109.8 610 60.5
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.0e-21 109.4 641 58.5
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.8e-21 108.6 217 38.2
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 4.0e-21 107.5 610 60.0
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.6e-20 104.8 127 46.5
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.7e-19 100.9 663 57.2
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 4.9e-19 100.5 620 49.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 4.9e-19 100.5 589 47.4
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.4e-18 98.2 240 35.8
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 7.0e-18 96.7 626 58.9
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 9.2e-18 96.3 122 45.1
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 9.2e-18 96.3 122 45.1
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.7e-17 94.7 218 35.3
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 4.6e-17 94.0 626 58.8
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 7.8e-17 93.2 505 47.3
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.0e-16 92.8 230 35.7
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.3e-15 87.4 78 57.7
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 4.3e-15 87.4 225 34.7
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 5.6e-15 87.0 190 36.3
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 3.6e-14 84.3 216 33.8
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 4.7e-14 84.0 104 50.0
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 3.1e-13 81.3 216 33.8
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 4.0e-13 80.9 235 33.6
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.2e-13 80.5 82 52.4
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 8.9e-13 79.7 216 34.3
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 1.9e-10 72.0 139 38.8
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 9.2e-10 69.7 159 33.3
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 1.2e-09 69.3 237 30.4
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 4.6e-09 67.4 148 42.6
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 4.6e-09 67.4 148 42.6
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 1.0e-08 66.2 86 47.7
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.3e-08 65.9 261 30.7
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.7e-08 65.5 123 38.2
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 1.7e-08 65.5 224 29.9
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 2.3e-08 65.1 251 28.3
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 8.6e-08 63.2 236 30.1
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 1.1e-07 62.8 201 30.8
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.9e-07 62.0 240 30.8
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 9.5e-07 59.7 110 40.9
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.2e-06 59.3 291 25.1
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.1e-06 58.5 159 32.7
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.1e-06 58.5 116 37.9
MBI05_g29099_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.8e-06 58.2 111 36.0
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 3.6e-06 57.8 283 27.6
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 6.2e-06 57.0 255 27.8
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.1e-06 56.6 154 33.1
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 8.1e-06 56.6 153 34.0


User provided reference genes

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