Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 1.3e-242 842.8 494 100.0
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 1.0e-221 773.5 478 96.4
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 7.4e-209 730.7 492 91.1
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 3.5e-118 429.5 594 58.2
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 4.2e-111 406.0 598 56.4
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 1.1e-98 364.8 583 54.9
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 3.8e-56 223.4 275 46.5
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 1.1e-55 221.9 276 47.8
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 2.0e-52 211.1 272 45.6
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 8.3e-51 205.7 327 40.7
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.6e-49 201.4 271 43.9
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 1.6e-49 201.4 283 42.4
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 8.0e-46 189.1 279 41.9
Peaxi162Scf01290g00019 Petunia axillaris HOM05D007736 ORTHO05D009783 5.2e-45 186.4 471 47.1
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 3.4e-44 183.7 245 44.9
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 9.8e-44 182.2 248 44.4
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 4.9e-43 179.9 250 40.8
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 1.4e-42 178.3 279 38.7
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 1.9e-42 177.9 243 42.4
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 2.4e-42 177.6 243 42.4
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 5.4e-42 176.4 281 39.5
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 7.0e-42 176.0 250 42.4
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 1.2e-41 175.3 248 42.3
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.6e-41 174.9 241 43.6
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 4.6e-41 173.3 243 41.2
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 7.8e-41 172.6 260 41.5
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 1.1e-39 168.7 236 41.5
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 1.8e-37 161.4 240 42.1
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 2.3e-37 161.0 240 40.4
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.2e-36 158.7 275 39.3
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 3.4e-36 157.1 262 38.2
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 5.8e-36 156.4 237 41.4
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 2.2e-35 154.5 229 39.3
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 2.9e-35 154.1 234 40.2
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 3.7e-35 153.7 256 39.1
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 6.4e-35 152.9 269 36.8
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 8.3e-35 152.5 234 39.3
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 1.4e-34 151.8 249 34.9
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 3.2e-34 150.6 277 36.5
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 9.2e-34 149.1 283 35.3
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 1.2e-33 148.7 281 36.7
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 1.6e-33 148.3 236 39.8
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 2.7e-33 147.5 130 50.8
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 2.3e-32 144.4 230 37.8
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 3.0e-32 144.1 275 35.6
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 5.1e-32 143.3 239 37.2
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 6.6e-32 142.9 220 39.5
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 1.1e-31 142.1 270 35.2
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 1.9e-31 141.4 250 39.2
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 2.5e-31 141.0 271 33.6
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 5.6e-31 139.8 276 33.7
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 1.6e-30 138.3 271 33.6
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 2.3e-29 134.4 241 39.0
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 6.8e-29 132.9 282 33.7
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 6.8e-29 132.9 261 34.1
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 5.8e-28 129.8 264 33.0
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.8e-28 129.8 287 36.2
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 9.9e-28 129.0 260 36.5
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 1.3e-27 128.6 264 33.0
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 9.2e-26 122.5 253 33.2
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 2.7e-25 120.9 231 35.5
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 1.3e-24 118.6 204 37.7
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.5e-23 115.2 113 47.8
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.5e-23 115.2 113 47.8
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.9e-23 114.8 113 47.8
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 2.5e-23 114.4 252 30.2
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 5.6e-23 113.2 232 31.9
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 9.5e-23 112.5 113 46.9
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.1e-22 111.3 113 46.9
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 2.1e-22 111.3 252 35.7
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 8.1e-22 109.4 132 39.4
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 8.1e-22 109.4 244 32.4
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.4e-21 107.8 285 30.2
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 3.1e-21 107.5 285 29.8
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 4.0e-21 107.1 109 47.7
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 5.2e-21 106.7 368 27.2
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 3.4e-20 104.0 267 27.7
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 5.4e-18 96.7 128 40.6
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 4.6e-17 93.6 115 41.7
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 6.6e-16 89.7 115 40.9
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 6.6e-16 89.7 135 37.0
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 1.5e-15 88.6 273 26.0
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.9e-15 88.2 97 46.4
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 2.4e-13 81.3 230 31.3
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 1.5e-12 78.6 223 31.8
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 5.4e-10 70.1 131 38.2
HPP92_001092 Vanilla planifolia HOM05D007736 ORTHO05D009783 1.3e-08 65.5 215 29.3


User provided reference genes

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