Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 6.0e-248 860.9 623 100.0
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 2.0e-179 633.3 520 97.3
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 1.7e-178 630.2 518 97.3
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 1.5e-153 547.4 519 88.8
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 9.2e-148 528.1 574 80.1
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.0e-146 523.1 574 80.0
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 1.0e-90 338.6 403 86.4
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 3.0e-90 337.0 521 68.7
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 2.5e-84 317.4 521 67.8
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 5.1e-82 309.7 520 68.1
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.1e-81 308.5 521 67.8
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 5.7e-81 306.2 481 65.1
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 7.7e-78 295.8 461 66.8
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 7.7e-78 295.8 461 66.8
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 2.2e-77 294.3 502 67.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.0e-70 271.2 515 62.3
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.2e-69 267.7 495 67.1
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 6.5e-69 266.2 526 62.9
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.9e-68 264.6 484 68.2
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.5e-68 263.1 526 62.4
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.8e-63 248.1 517 61.7
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 5.3e-63 246.5 442 71.7
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 2.2e-61 241.1 487 64.9
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 2.5e-60 237.7 320 56.2
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.9e-53 214.2 534 59.7
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.8e-53 213.8 534 58.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 7.0e-47 193.0 247 40.9
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 4.3e-44 183.7 508 53.0
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 4.7e-43 180.3 451 64.1
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.7e-40 171.8 245 40.8
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 3.7e-40 170.6 484 58.1
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 7.3e-36 156.4 215 42.8
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 1.4e-34 152.1 244 37.3
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 5.2e-34 150.2 241 38.2
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 5.8e-33 146.7 213 42.7
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 1.7e-32 145.2 215 40.5
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.2e-32 144.8 486 53.7
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 1.1e-31 142.5 223 41.7
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 1.1e-31 142.5 227 40.5
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.4e-31 142.1 225 39.1
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 7.0e-31 139.8 222 41.4
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 2.0e-30 138.3 216 42.1
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 4.6e-30 137.1 211 38.4
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 6.0e-30 136.7 188 40.4
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 7.8e-30 136.3 218 39.0
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.0e-29 136.0 193 40.9
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.0e-29 136.0 194 42.3
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 3.0e-29 134.4 216 41.7
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 3.0e-29 134.4 210 38.1
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 1.1e-28 132.5 210 35.7
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 1.5e-28 132.1 221 40.3
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 7.3e-28 129.8 214 38.3
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 9.5e-28 129.4 216 36.6
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 9.5e-28 129.4 217 40.1
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 3.6e-27 127.5 209 36.4
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.6e-27 127.5 209 43.5
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.7e-27 127.1 459 54.2
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 8.1e-27 126.3 215 37.7
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 8.1e-27 126.3 285 42.5
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.1e-26 125.9 198 40.4
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 1.4e-26 125.6 215 36.3
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.0e-26 124.0 321 36.4
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 4.0e-26 124.0 223 39.0
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 4.0e-26 124.0 223 39.0
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 5.2e-26 123.6 204 39.7
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 6.8e-26 123.2 166 45.8
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 1.2e-25 122.5 212 34.9
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 7.5e-25 119.8 213 33.8
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 9.9e-25 119.4 190 38.9
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 9.9e-25 119.4 214 36.4
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.3e-24 119.0 209 38.3
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.7e-24 117.5 191 36.6
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 3.7e-24 117.5 242 33.5
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.4e-23 115.5 201 35.8
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.9e-23 115.2 193 36.3
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.9e-23 115.2 197 39.6
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 9.2e-23 112.8 193 35.8
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.7e-22 111.3 208 35.1
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 3.5e-22 110.9 207 35.3
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 6.0e-22 110.2 194 38.7
PGSC0003DMG402029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 7.8e-22 109.8 86 66.3
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 1.7e-21 108.6 194 38.1
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 5.6e-20 103.6 172 37.2
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 1.2e-19 102.4 192 35.9
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.2e-19 102.4 190 33.7
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.1e-19 101.7 197 36.5
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 4.7e-19 100.5 190 37.9
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 6.2e-19 100.1 153 44.4
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.8e-18 98.6 191 32.5
Zm00001eb081680 Zea mays HOM05D006080 ORTHO05D007382 1.8e-18 98.6 386 62.4
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 3.1e-18 97.8 164 36.6
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 4.0e-18 97.4 190 34.7
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 4.0e-18 97.4 190 34.7
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 6.8e-18 96.7 192 32.3
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 8.9e-18 96.3 166 34.3
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 2.6e-17 94.7 112 43.8
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 5.8e-17 93.6 190 34.2
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 7.6e-17 93.2 182 32.4
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 9.9e-17 92.8 190 33.7
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 1.7e-16 92.0 187 34.2
Oeu051440.2 Olea europaea HOM05D006080 ORTHO05D007382 1.7e-16 92.0 57 70.2
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.2e-16 91.7 146 41.1
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 4.9e-16 90.5 187 34.2
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 4.9e-16 90.5 150 42.0
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.9e-16 90.5 144 42.4
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 4.9e-16 90.5 144 41.7
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 1.1e-15 89.4 144 42.4
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 1.1e-15 89.4 197 29.9
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.4e-15 89.0 187 33.7
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 1.9e-15 88.6 150 38.7
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 1.9e-15 88.6 385 56.1
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 4.1e-15 87.4 150 38.0
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 2.1e-14 85.1 122 39.3
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 4.6e-14 84.0 107 43.9
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 1.7e-13 82.0 143 39.9
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.3e-13 81.6 113 39.8
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 2.3e-13 81.6 430 54.9
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 3.0e-13 81.3 146 39.0
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 3.0e-13 81.3 145 37.2
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 2.5e-12 78.2 105 41.0
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 3.3e-12 77.8 188 30.9
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 1.6e-11 75.5 87 43.7
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 1.1e-10 72.8 236 25.4
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 1.2e-09 69.3 169 29.0
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 5.8e-09 67.0 186 26.9
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 9.9e-09 66.2 169 28.4
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 3.8e-08 64.3 197 27.4
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 4.9e-08 63.9 188 27.7
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.9e-08 63.9 188 27.1
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 4.9e-08 63.9 188 27.1
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 4.9e-08 63.9 187 29.9
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 6.4e-08 63.5 110 31.8
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 6.4e-08 63.5 180 28.9
VMungo1215G0866 Vigna mungo HOM05D000015 ORTHO05D007382 8.4e-08 63.2 58 58.6
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.1e-07 62.8 117 32.5
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 1.4e-07 62.4 169 26.6
Oeu032648.1 Olea europaea HOM05D006080 ORTHO05D007382 1.4e-07 62.4 39 66.7
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 1.9e-07 62.0 121 32.2
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 3.2e-07 61.2 110 31.8
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 3.2e-07 61.2 186 27.4
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 4.2e-07 60.8 110 31.8
MD02G1218600 Malus domestica HOM05D000104 ORTHO05D009920 4.2e-07 60.8 180 28.3
MBI04_g06224_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D002477 5.4e-07 60.5 246 24.0
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 5.4e-07 60.5 186 29.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 7.1e-07 60.1 110 31.8
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 7.1e-07 60.1 110 29.1
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.2e-06 59.3 186 26.9
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.2e-06 59.3 186 26.9
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 1.6e-06 58.9 186 26.9
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 1.6e-06 58.9 110 29.1
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 2.1e-06 58.5 110 30.0
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 2.7e-06 58.2 170 27.1
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 2.7e-06 58.2 185 27.0
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 4.6e-06 57.4 110 29.1
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 4.6e-06 57.4 186 26.9
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 7.8e-06 56.6 170 25.3
SalBow4G1486 Salvia bowleyana HOM05D008470 ORTHO05D010644 7.8e-06 56.6 63 41.3


User provided reference genes

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