Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.2e-217 757.3 415 100.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 8.4e-198 693.7 409 94.4
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.9e-194 682.6 421 88.4
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.8e-177 624.8 418 84.2
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 7.4e-170 600.9 406 81.0
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.8e-169 598.2 417 81.8
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.2e-156 557.0 423 75.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.4e-146 522.3 422 69.0
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.0e-143 513.1 416 70.2
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 5.6e-141 505.0 422 67.5
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.2e-140 503.8 421 67.2
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 7.5e-138 494.6 428 67.5
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 3.7e-137 492.3 435 64.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 9.2e-136 487.6 411 67.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 7.8e-135 484.6 423 66.0
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.0e-134 482.6 422 66.8
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.0e-131 474.2 423 63.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.0e-131 472.2 429 64.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.3e-129 467.2 424 63.7
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.7e-129 466.8 446 63.2
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 8.3e-129 464.5 420 67.6
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.4e-128 463.8 423 63.4
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-128 463.4 424 63.4
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 5.4e-128 461.8 448 61.8
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.2e-127 460.7 429 63.2
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.2e-127 460.7 429 63.2
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.0e-127 459.9 422 64.0
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.5e-127 459.1 425 62.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.0e-126 457.6 433 64.7
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.3e-126 457.2 409 66.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.5e-125 453.8 419 64.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.5e-125 453.0 426 61.5
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.2e-124 450.7 416 64.7
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.1e-124 449.9 495 56.0
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.1e-124 449.9 423 63.1
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.8e-124 449.5 430 62.6
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.6e-124 449.1 416 64.4
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.6e-124 449.1 424 61.8
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 3.6e-124 449.1 409 64.3
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.2e-124 448.4 431 62.4
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.1e-123 447.6 416 63.7
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 4.0e-123 445.7 424 61.8
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.5e-122 443.7 417 62.6
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.0e-122 443.4 414 63.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 4.4e-122 442.2 425 60.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.8e-122 441.0 410 62.4
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.9e-121 438.7 424 60.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.4e-120 437.2 428 63.8
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 4.1e-120 435.6 412 62.6
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 3.0e-118 429.5 431 64.0
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.9e-118 429.1 424 63.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 8.6e-118 427.9 424 63.4
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.5e-117 427.2 419 61.8
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.3e-117 426.0 410 62.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 7.3e-117 424.9 421 61.8
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 9.5e-117 424.5 444 57.2
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 8.1e-116 421.4 472 56.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 5.2e-115 418.7 419 60.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 8.9e-115 417.9 414 60.1
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 8.9e-115 417.9 399 61.9
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.3e-113 414.1 424 58.5
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 2.2e-113 413.3 426 60.1
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 8.4e-113 411.4 409 59.7
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.1e-112 411.0 426 60.3
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.1e-111 406.8 420 59.8
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.7e-111 406.4 428 60.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 4.3e-109 399.1 421 58.4
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.3e-109 399.1 369 64.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 4.3e-109 399.1 401 60.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.8e-108 396.4 371 62.8
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 8.1e-108 394.8 417 57.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.4e-107 393.3 370 61.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.2e-106 391.0 293 71.0
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.2e-105 386.7 415 58.8
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 3.8e-105 386.0 425 58.1
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 4.9e-105 385.6 422 58.1
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.2e-104 382.5 413 55.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.6e-103 380.6 417 58.0
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 7.8e-103 378.3 406 57.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.3e-102 377.5 416 56.0
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.0e-102 376.3 413 59.1
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.9e-102 375.9 416 56.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 6.6e-102 375.2 433 54.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 9.6e-101 371.3 406 57.9
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.1e-100 370.2 419 57.8
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.0e-99 365.9 427 54.1
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 4.0e-99 365.9 428 54.7
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 2.6e-98 363.2 402 56.5
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 7.6e-98 361.7 403 55.8
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 2.2e-97 360.1 441 52.2
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 2.2e-97 360.1 405 53.8
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.4e-96 357.5 423 53.2
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.2e-96 355.9 364 57.1
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.6e-95 352.4 418 54.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 6.0e-95 352.1 418 53.6
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.5e-93 346.7 396 53.3
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.1e-92 343.6 277 70.4
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 4.8e-92 342.4 420 53.6
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 8.1e-92 341.7 364 58.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 8.1e-92 341.7 391 55.8
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 8.1e-92 341.7 391 55.8
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.6e-90 336.7 458 49.3
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.5e-90 335.9 418 51.4
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.7e-89 334.0 354 55.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.9e-87 325.1 406 53.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 9.6e-85 318.2 314 60.5
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 8.1e-84 315.1 432 53.2
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 3.1e-83 313.2 418 50.0
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 6.9e-83 312.0 263 67.3
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.2e-79 301.2 392 50.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.1e-78 295.8 298 59.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 9.6e-77 291.6 326 53.7
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.1e-76 290.4 413 50.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 7.6e-74 282.0 264 62.9
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.9e-72 277.3 272 61.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.3e-68 264.6 266 62.4
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 6.5e-65 252.3 418 46.7
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 3.0e-62 243.4 258 60.5
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 8.8e-62 241.9 442 42.3
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.7e-61 239.2 267 55.8
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.2e-60 237.3 337 47.8
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.8e-59 234.2 271 56.5
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 3.1e-59 233.4 272 55.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-58 231.1 326 50.0
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.5e-58 231.1 266 55.6
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.4e-54 218.0 190 64.7
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.7e-52 211.1 266 51.1
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.1e-51 206.8 339 44.5
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.1e-51 206.5 428 42.1
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 5.3e-51 206.1 176 65.3
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.6e-50 203.8 455 40.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.3e-49 201.4 260 51.9
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 4.2e-48 196.4 261 50.2
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 4.1e-43 179.9 403 39.2
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 5.3e-43 179.5 193 55.4
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-41 174.5 135 67.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 4.2e-40 169.9 134 66.4
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-31 141.4 180 51.7
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 6.8e-30 136.0 551 30.1
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 5.7e-29 132.9 129 61.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 3.1e-27 127.1 148 54.7
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 7.0e-27 125.9 143 53.8
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-25 121.7 143 53.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-16 92.0 125 48.0
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 4.0e-14 83.6 174 36.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 9.2e-11 72.4 228 33.3
CAN.G165.26 Capsicum annuum HOM05D000541 ORTHO05D000137 4.3e-08 63.5 67 55.2
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 3.6e-07 60.5 37 73.0


User provided reference genes

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