Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 4.5e-261 904.0 459 100.0
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 7.1e-230 800.4 413 97.6
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.1e-226 788.9 413 96.1
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.6e-181 638.6 430 78.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 3.1e-161 572.4 306 93.1
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.6e-160 570.1 414 74.9
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.5e-158 563.5 409 72.6
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.6e-155 552.7 415 69.6
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 3.4e-155 552.4 403 72.5
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.1e-153 547.4 375 73.6
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.1e-153 547.4 375 73.6
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 9.1e-153 544.3 413 69.5
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.2e-152 543.9 402 71.6
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 4.7e-149 531.9 406 69.7
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 3.0e-148 529.3 434 66.6
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.7e-146 523.5 430 67.9
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-146 523.5 437 65.2
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.3e-146 521.2 448 64.7
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 8.3e-146 521.2 405 67.7
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 4.1e-145 518.8 411 66.9
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.6e-144 516.9 345 75.4
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 5.9e-144 515.0 381 70.1
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 5.9e-144 515.0 407 66.6
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.0e-143 514.2 419 65.4
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.7e-143 513.5 351 72.9
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.7e-143 513.5 342 74.3
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.9e-142 510.0 406 66.3
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 3.3e-142 509.2 344 74.1
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 9.5e-142 507.7 442 64.3
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 1.6e-141 506.9 425 66.4
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 6.1e-141 505.0 432 65.0
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.0e-141 504.6 429 64.6
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 8.0e-141 504.6 344 73.3
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.0e-140 504.2 417 65.2
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 2.3e-140 503.1 365 70.4
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.3e-140 503.1 406 66.7
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 3.0e-140 502.7 427 64.6
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 3.0e-140 502.7 351 73.5
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 4.0e-140 502.3 340 72.1
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.2e-139 500.7 410 65.6
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.5e-139 500.4 395 66.1
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 3.4e-139 499.2 334 74.3
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 3.4e-139 499.2 395 66.8
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 3.4e-139 499.2 404 65.1
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 4.4e-139 498.8 416 63.5
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 5.7e-139 498.4 418 64.8
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 7.5e-139 498.0 333 73.6
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 7.5e-139 498.0 372 68.8
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.3e-138 497.3 396 65.9
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.3e-138 497.3 431 65.9
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 4.9e-138 495.4 418 64.6
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 6.4e-138 495.0 407 63.1
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 6.4e-138 495.0 335 74.0
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.1e-137 494.2 336 71.1
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.1e-137 494.2 332 73.2
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 4.1e-137 492.3 413 64.2
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 5.9e-136 488.4 405 66.9
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.3e-135 487.3 403 64.5
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.7e-135 486.9 403 64.5
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 5.0e-135 485.3 334 69.8
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 5.0e-135 485.3 398 64.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 6.6e-135 485.0 363 68.0
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 3.3e-134 482.6 424 61.1
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.1e-133 479.9 341 68.3
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 6.2e-133 478.4 405 63.7
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.8e-132 476.9 441 59.9
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.4e-131 472.2 330 72.1
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 2.9e-130 469.5 334 69.5
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 3.7e-130 469.2 418 60.8
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 3.7e-130 469.2 340 67.1
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 3.7e-130 469.2 340 67.1
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 4.9e-130 468.8 342 68.4
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.9e-129 466.8 334 69.5
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 3.2e-129 466.1 336 68.5
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 4.1e-129 465.7 342 68.1
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.2e-128 464.2 340 66.8
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.2e-128 464.2 337 67.7
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.2e-128 464.2 551 51.5
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 4.6e-128 462.2 393 61.6
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 7.8e-128 461.5 533 51.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 1.1e-126 457.6 399 59.9
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 4.7e-125 452.2 345 64.1
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 1.4e-124 450.7 343 68.5
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 3.1e-124 449.5 353 68.3
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.0e-124 449.1 371 60.9
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 5.2e-124 448.7 415 61.4
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 8.9e-124 448.0 338 66.0
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.5e-123 447.2 341 65.1
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 2.0e-123 446.8 425 58.4
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.6e-123 446.4 338 65.7
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 4.4e-123 445.7 338 65.4
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 4.4e-123 445.7 338 65.4
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 9.9e-123 444.5 371 60.4
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.9e-122 442.2 368 60.1
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 6.4e-122 441.8 338 64.5
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 8.3e-122 441.4 338 64.2
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.6e-120 437.2 403 58.1
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 3.0e-119 433.0 332 66.6
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.6e-118 428.7 347 63.1
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 4.1e-113 412.5 471 55.0
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 4.7e-109 399.1 293 69.3
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 8.1e-109 398.3 292 69.2
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.1e-108 397.9 446 50.4
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 4.0e-108 396.0 275 69.8
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 4.0e-108 396.0 294 68.0
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 2.2e-106 390.2 215 84.7
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.8e-106 389.4 213 86.9
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 5.4e-105 385.6 237 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 3.9e-103 379.4 283 65.4
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.3e-100 369.0 567 42.2
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 2.4e-97 360.1 258 67.8
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.0e-95 354.8 310 60.3
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 4.0e-92 342.8 310 61.3
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 6.4e-90 335.5 231 75.3
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 6.0e-88 328.9 422 50.5
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 5.1e-87 325.9 197 75.6
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 5.1e-87 325.9 321 60.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.5e-86 323.6 228 74.1
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 6.2e-85 318.9 214 72.9
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 6.9e-84 315.5 217 70.5
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-80 303.5 270 56.3
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 2.5e-73 280.4 232 60.3
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 2.0e-62 244.2 260 56.5
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.3e-46 190.3 254 43.3
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.5e-41 174.9 246 37.0
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.8e-29 134.0 298 32.6
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.6e-27 128.3 247 36.0
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.8e-26 123.6 207 45.4
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 2.5e-25 120.9 130 53.1
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.5e-22 111.7 88 65.9
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 2.7e-19 100.9 119 50.4
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 2.3e-18 97.8 167 44.9
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.3e-17 94.0 70 65.7
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.3e-17 92.8 64 70.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.3e-17 92.8 64 70.3
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.1e-15 89.0 166 33.7
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 1.8e-15 88.2 145 43.4
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.3e-15 87.8 64 64.1
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.3e-15 87.8 64 64.1
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.3e-15 87.8 64 64.1
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 3.1e-15 87.4 145 43.4
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.9e-15 85.9 64 62.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 2.0e-14 84.7 259 28.6
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 5.8e-14 83.2 156 37.8
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 4.9e-13 80.1 49 81.6
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 6.4e-13 79.7 248 26.6
Cre10.g431350 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 2.4e-12 77.8 175 31.4
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 3.5e-11 73.9 170 30.6


User provided reference genes

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