Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.8e-204 715.7 354 100.0
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 2.2e-202 708.8 354 99.2
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.4e-193 679.5 354 94.9
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 5.0e-167 591.3 355 82.0
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.1e-158 563.5 357 79.3
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 6.4e-154 547.7 357 77.0
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.4e-145 519.2 357 74.2
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.5e-142 509.2 357 72.3
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.4e-140 503.4 354 70.9
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 3.1e-140 502.3 357 70.6
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-139 500.0 357 71.1
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 5.8e-139 498.0 357 70.9
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.9e-138 495.7 357 71.1
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.2e-137 492.3 357 70.6
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 4.1e-137 491.9 357 69.7
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 5.4e-137 491.5 357 70.6
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 9.2e-137 490.7 357 70.3
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 3.5e-136 488.8 357 69.5
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.6e-136 488.4 357 70.0
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 4.6e-136 488.4 357 68.9
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.3e-135 486.9 357 69.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 2.5e-134 482.6 357 66.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.5e-134 482.6 357 67.2
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 4.3e-134 481.9 357 66.9
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.3e-134 481.1 357 67.5
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 9.6e-134 480.7 355 68.7
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.2e-133 480.3 357 68.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.6e-133 479.9 357 66.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 2.1e-133 479.6 357 66.4
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 6.2e-133 478.0 354 68.9
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 6.2e-133 478.0 357 68.3
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 8.1e-133 477.6 357 67.8
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 8.1e-133 477.6 356 68.0
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 8.1e-133 477.6 357 68.3
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.4e-132 476.9 357 66.9
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.4e-132 476.9 357 68.1
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.4e-132 476.1 355 67.6
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.1e-132 475.7 357 67.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 6.9e-132 474.6 357 66.9
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 6.9e-132 474.6 357 66.9
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 6.9e-132 474.6 357 67.5
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.5e-131 473.4 357 66.7
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.0e-131 473.0 357 67.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.0e-131 473.0 357 67.5
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.0e-131 473.0 357 66.4
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.4e-131 471.9 356 67.1
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 5.8e-131 471.5 357 66.4
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 5.8e-131 471.5 357 65.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 5.8e-131 471.5 348 69.3
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 7.6e-131 471.1 357 67.2
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.7e-130 469.9 357 67.8
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.2e-130 469.5 357 66.7
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.2e-130 469.5 357 66.7
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.9e-130 469.2 357 66.9
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 3.8e-130 468.8 357 66.1
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 4.9e-130 468.4 356 66.6
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 6.4e-130 468.0 358 68.2
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.1e-129 467.2 357 67.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.1e-129 467.2 358 67.3
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.4e-129 466.8 357 66.1
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.4e-129 466.8 357 66.1
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.9e-129 466.5 357 65.0
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.4e-129 466.1 357 65.0
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.4e-129 466.1 357 66.4
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.2e-129 465.7 357 64.7
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 5.4e-129 464.9 357 67.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 7.1e-129 464.5 357 66.4
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 9.3e-129 464.2 357 66.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 9.3e-129 464.2 357 66.7
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.2e-128 463.8 357 67.2
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.6e-128 463.4 357 66.4
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.7e-128 462.6 358 65.6
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 6.0e-128 461.5 356 65.7
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 7.8e-128 461.1 357 65.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 7.8e-128 461.1 357 65.8
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.0e-127 460.7 357 64.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-127 460.3 358 66.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-127 460.3 358 66.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.3e-127 459.5 357 65.0
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 2.3e-127 459.5 357 65.0
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 3.9e-127 458.8 354 65.3
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.9e-127 458.8 357 66.1
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 5.1e-127 458.4 357 66.1
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.1e-127 458.4 357 65.5
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 4.3e-126 455.3 356 66.3
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.6e-125 453.4 357 63.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.1e-125 453.0 357 64.1
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 5.3e-124 448.4 360 65.0
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 6.9e-124 448.0 357 62.7
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 4.5e-123 445.3 353 63.7
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.5e-123 445.3 354 64.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.8e-122 442.2 354 62.7
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 8.4e-122 441.0 324 67.6
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.5e-120 435.6 356 62.1
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.9e-118 429.9 357 61.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.9e-118 429.9 356 62.4
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.9e-118 429.9 359 64.1
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 4.3e-118 428.7 356 61.5
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.1e-116 424.1 357 59.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.4e-116 422.9 357 61.3
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 9.0e-116 421.0 356 59.8
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.2e-115 420.6 356 61.0
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.5e-115 420.2 356 60.7
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.2e-114 416.4 356 56.7
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 9.3e-113 411.0 357 59.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.2e-112 410.6 356 59.0
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.1e-112 409.8 356 58.7
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.7e-112 409.5 354 57.1
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.6e-112 408.7 356 58.4
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 6.7e-111 404.8 356 56.5
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.1e-109 399.8 357 56.9
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-108 397.5 315 63.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.2e-107 394.0 356 55.9
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.9e-106 389.4 354 55.9
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 4.9e-106 388.7 356 55.6
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 9.3e-105 384.4 354 55.6
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.6e-104 382.1 339 56.3
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.3e-103 380.6 251 74.5
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.8e-92 343.6 282 61.0
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.1e-89 334.3 356 49.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.0e-87 326.2 339 49.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.1e-81 307.8 316 53.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.4e-81 307.4 304 55.3
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 3.3e-70 269.6 344 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.1e-68 264.6 300 46.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 3.6e-64 249.6 302 45.7
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 9.1e-60 235.0 239 51.0
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 9.5e-57 224.9 266 48.1
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.6e-48 196.4 185 56.2
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.5e-46 191.0 128 71.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.5e-41 174.5 161 55.9
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 4.9e-37 159.5 132 63.6
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-29 134.8 99 69.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.9e-29 132.9 91 71.4
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.6e-24 117.9 70 78.6
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-23 115.2 74 74.3
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 5.2e-23 112.8 70 77.1
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 7.6e-22 109.0 70 75.7
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.6e-22 109.0 70 75.7
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 4.6e-19 99.8 79 59.5
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.2e-16 91.7 106 49.1


User provided reference genes

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