Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 2.4e-73 278.9 151 100.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.7e-71 272.7 151 97.4
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 2.9e-71 271.9 151 97.4
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.4e-63 243.8 152 86.8
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.9e-62 242.7 146 88.4
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.6e-58 229.6 152 81.6
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.9e-51 206.1 155 72.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.6e-45 186.4 151 68.2
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 1.3e-44 183.3 149 67.8
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.3e-44 183.3 151 69.5
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 3.0e-44 182.2 151 67.5
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.9e-44 181.8 151 69.5
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.1e-43 180.3 151 67.5
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-43 179.5 151 68.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.9e-43 179.5 151 66.9
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.3e-42 176.8 151 67.5
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.6e-42 176.4 151 66.9
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.6e-42 176.4 151 67.5
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.6e-42 176.4 151 66.9
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.6e-42 176.4 151 67.5
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 2.8e-42 175.6 151 66.2
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.3e-42 174.5 151 65.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 6.3e-42 174.5 151 66.2
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 8.2e-42 174.1 151 67.5
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.8e-41 172.9 151 64.9
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.4e-41 172.6 151 64.2
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.4e-41 172.6 151 64.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 3.1e-41 172.2 151 61.6
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 4.1e-41 171.8 151 64.2
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 5.3e-41 171.4 151 64.9
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.0e-41 170.6 143 66.4
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-40 170.2 151 64.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-40 170.2 151 64.9
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.5e-40 169.9 151 64.2
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.4e-40 168.7 147 64.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.5e-40 168.3 151 63.6
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.5e-40 168.3 151 63.6
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 4.5e-40 168.3 150 64.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 5.9e-40 167.9 151 62.3
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.6e-40 167.5 143 65.0
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 7.6e-40 167.5 142 66.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.0e-39 167.2 151 64.2
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 2.2e-39 166.0 151 62.3
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 5.0e-39 164.9 151 59.6
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 8.5e-39 164.1 151 60.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.1e-38 163.7 151 61.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.4e-38 163.3 151 62.9
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.9e-38 162.9 151 64.2
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.9e-38 162.9 132 68.2
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 2.5e-38 162.5 151 60.9
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 2.5e-38 162.5 151 61.6
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 7.2e-38 161.0 153 60.1
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 7.2e-38 161.0 146 61.6
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.6e-37 159.8 151 62.3
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.6e-37 159.8 151 60.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.1e-37 159.5 151 61.6
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.7e-37 159.1 142 62.0
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.8e-36 156.4 151 58.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 3.0e-36 155.6 148 61.5
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 6.7e-36 154.5 147 57.8
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.1e-35 153.7 138 61.6
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.1e-35 153.7 151 60.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.2e-34 149.4 142 62.0
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.4e-33 146.7 138 59.4
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-33 145.2 122 64.8
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 4.1e-33 145.2 151 58.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 9.1e-33 144.1 127 66.9
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-32 143.7 127 66.1
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 3.4e-32 142.1 120 63.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-31 140.6 121 67.8
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-31 140.6 121 67.8
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.8e-31 138.7 151 55.0
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.8e-31 138.7 119 62.2
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 5.0e-31 138.3 151 52.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.5e-31 137.9 151 55.0
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.1e-30 137.1 151 56.3
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.2e-30 135.6 112 67.9
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 7.2e-30 134.4 138 57.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.2e-29 133.7 151 57.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.6e-29 133.3 152 52.6
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.1e-29 132.9 112 67.0
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.6e-29 132.1 151 52.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.6e-29 132.1 151 52.3
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 4.6e-29 131.7 120 61.7
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.6e-29 131.7 152 52.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.6e-29 131.7 152 52.6
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 6.1e-29 131.3 151 55.6
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 7.9e-29 131.0 151 53.0
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.9e-29 131.0 121 62.0
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.0e-28 130.6 151 53.6
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.4e-28 130.2 115 61.7
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-28 129.8 152 52.6
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 54.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.8e-28 127.5 147 51.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 2.0e-27 126.3 151 52.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.0e-27 126.3 151 50.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.4e-27 125.2 151 52.3
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 4.4e-27 125.2 151 52.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.4e-27 125.2 151 52.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.4e-27 125.2 151 52.3
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 4.4e-27 125.2 151 52.3
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 9.7e-27 124.0 151 51.7
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 9.7e-27 124.0 151 51.7
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.3e-26 123.6 151 52.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.8e-26 121.7 152 52.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 6.3e-26 121.3 151 51.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 8.2e-26 120.9 151 50.3
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.1e-25 120.6 113 61.1
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.1e-25 120.6 112 60.7
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.4e-25 120.2 146 47.9
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.8e-25 119.8 126 54.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.8e-25 119.8 151 50.3
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 6.9e-25 117.9 152 52.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.5e-24 115.2 152 50.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.7e-23 113.2 153 51.0
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.2e-21 107.1 62 87.1
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.8e-18 95.9 151 39.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 8.2e-18 94.4 121 50.4
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.4e-17 93.6 92 57.6
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.6e-16 90.1 89 53.9
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.7e-16 87.8 80 58.8
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.0e-15 87.4 91 52.7
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.9e-15 85.9 95 54.7
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.9e-14 83.2 77 61.0
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 3.6e-13 79.0 76 59.2
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 8.0e-13 77.8 59 69.5
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.2e-12 75.1 104 46.2
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.2e-12 75.1 104 47.1
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 8.2e-10 67.8 92 48.9
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-08 63.2 83 44.6
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.5e-08 62.4 101 46.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.5e-08 62.4 101 46.5
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-06 56.6 69 49.3


User provided reference genes

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