Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g104060.3 Solanum lycopersicum HOM05D006894 ORTHO05D008724 1.8e-240 835.5 421 100.0
Sopen01g046470 Solanum pennellii HOM05D006894 ORTHO05D008724 3.8e-230 801.2 414 98.6
PGSC0003DMG400023767 Solanum tuberosum HOM05D006894 ORTHO05D008724 7.5e-210 733.8 435 88.3
CAN.G798.8 Capsicum annuum HOM05D006894 ORTHO05D008724 2.0e-207 725.7 415 88.7
Nitab4.5_0000816g0080 Nicotiana tabacum HOM05D006894 ORTHO05D008724 2.5e-205 718.8 420 86.7
Nitab4.5_0010336g0030 Nicotiana tabacum HOM05D006894 ORTHO05D008724 3.1e-200 701.8 411 87.3
Peaxi162Scf00017g02640 Petunia axillaris HOM05D006894 ORTHO05D008724 2.2e-185 652.5 348 92.5
Peaxi162Scf00011g00531 Petunia axillaris HOM05D006894 ORTHO05D008724 1.6e-180 636.3 380 84.7
QL02p099211 Quercus lobata HOM05D006894 ORTHO05D008724 1.8e-171 606.3 380 74.5
Cfa005507 Carpinus fangiana HOM05D006894 ORTHO05D008724 3.5e-167 592.0 364 77.2
CANSAT11G1074 Cannabis sativa HOM05D006894 ORTHO05D008724 1.7e-161 573.2 375 72.8
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.2e-161 572.8 369 75.1
Ciclev10001270m.g Citrus clementina HOM05D006894 ORTHO05D008724 2.9e-161 572.4 372 73.1
MD08G1235500 Malus domestica HOM05D006894 ORTHO05D008724 3.8e-161 572.0 365 73.7
Thecc.02G114400 Theobroma cacao HOM05D006894 ORTHO05D008724 3.8e-161 572.0 394 69.0
Atru.chr6.599 Acer truncatum HOM05D006894 ORTHO05D008724 4.9e-161 571.6 375 72.3
VMungo0251G0921 Vigna mungo HOM05D006894 ORTHO05D008724 4.9e-161 571.6 415 67.5
Oeu027798.1 Olea europaea HOM05D006894 ORTHO05D008724 6.4e-161 571.2 411 69.3
Atru.chr6.614 Acer truncatum HOM05D006894 ORTHO05D008724 8.4e-161 570.9 375 72.3
Gorai.005G242400 Gossypium raimondii HOM05D006894 ORTHO05D008724 2.4e-160 569.3 384 70.1
Gohir.D02G214600 Gossypium hirsutum HOM05D006894 ORTHO05D008724 3.2e-160 568.9 396 68.9
GSVIVG01022874001 Vitis vinifera HOM05D006894 ORTHO05D008724 4.1e-160 568.5 405 69.9
Glyma.05G168900 Glycine max HOM05D006894 ORTHO05D008724 7.1e-160 567.8 376 72.1
Gohir.A03G193500 Gossypium hirsutum HOM05D006894 ORTHO05D008724 1.2e-159 567.0 384 69.3
CiPaw.05G048800 Carya illinoinensis HOM05D006894 ORTHO05D008724 3.5e-159 565.5 382 70.2
RcHm_v2.0_Chr7g0221781 Rosa chinensis HOM05D006894 ORTHO05D008724 3.5e-159 565.5 393 71.0
Phvul.002G249600 Phaseolus vulgaris HOM05D006894 ORTHO05D008724 6.0e-159 564.7 375 72.0
TAR628G1558 Trochodendron aralioides HOM05D006894 ORTHO05D008724 6.0e-159 564.7 401 70.1
HanXRQChr09g0249011 Helianthus annuus HOM05D006894 ORTHO05D008724 1.0e-158 563.9 398 69.6
Prupe.1G571400 Prunus persica HOM05D006894 ORTHO05D008724 2.3e-158 562.8 359 74.1
FAN08G3638 Fragaria x ananassa HOM05D006894 ORTHO05D008724 8.6e-158 560.8 379 71.8
arahy.Tifrunner.gnm1.ann1.7VS6FJ Arachis hypogaea HOM05D006894 ORTHO05D008724 1.1e-157 560.5 369 72.1
Duzib248G0689 Durio zibethinus HOM05D006894 ORTHO05D008724 1.5e-157 560.1 391 69.1
TPR.G23092 Trifolium pratense HOM05D006894 ORTHO05D008724 1.5e-157 560.1 411 67.9
arahy.Tifrunner.gnm1.ann1.NZQI89 Arachis hypogaea HOM05D006894 ORTHO05D008724 1.9e-157 559.7 369 72.1
TWI14G1412 Tripterygium wilfordii HOM05D006894 ORTHO05D008724 7.3e-157 557.8 375 70.1
COL.COLO4_11781 Corchorus olitorius HOM05D006894 ORTHO05D008724 1.2e-156 557.0 415 67.0
Migut.B00823 Erythranthe guttata HOM05D006894 ORTHO05D008724 4.7e-156 555.1 367 74.4
Psat7g062040 Pisum sativum HOM05D006894 ORTHO05D008724 4.7e-156 555.1 401 69.3
Lj9A304G82 Lonicera japonica HOM05D006894 ORTHO05D008724 8.1e-156 554.3 405 67.9
Lalb_Chr12g0204471 Lupinus albus HOM05D006894 ORTHO05D008724 1.8e-155 553.1 374 70.6
Nn1g08851 Nelumbo nucifera HOM05D006894 ORTHO05D008724 9.0e-155 550.8 386 66.6
Medtr8g088790 Medicago truncatula HOM05D006894 ORTHO05D008724 1.2e-154 550.4 402 67.4
Ca_17824_v3 Cicer arietinum L. HOM05D006894 ORTHO05D008724 2.0e-154 549.7 360 73.1
PSO528G0189 Papaver somniferum HOM05D006894 ORTHO05D008724 2.0e-154 549.7 368 72.0
CsaV3_6G037480 Cucumis sativus L. HOM05D006894 ORTHO05D008724 2.6e-154 549.3 363 72.5
Manes.07G017700 Manihot esculenta HOM05D006894 ORTHO05D008724 3.4e-154 548.9 364 72.3
PSO170G1552 Papaver somniferum HOM05D006894 ORTHO05D008724 9.9e-154 547.4 384 69.3
Eucgr.G00568 Eucalyptus grandis HOM05D006894 ORTHO05D008724 6.4e-153 544.7 392 67.1
ECA240G3758 Erigeron canadensis HOM05D006894 ORTHO05D008724 8.4e-153 544.3 376 71.0
AT1G60990 Arabidopsis thaliana HOM05D006894 ORTHO05D008724 4.2e-152 542.0 368 70.1
Carub.0002s0422 Capsella rubella HOM05D006894 ORTHO05D008724 7.1e-152 541.2 368 70.4
CARHR052050 Cardamine hirsuta HOM05D006894 ORTHO05D008724 1.6e-151 540.0 376 68.4
Thhalv10023478m.g Eutrema salsugineum HOM05D006894 ORTHO05D008724 7.8e-151 537.7 366 69.4
Sp2g03530 Schrenkiella parvula HOM05D006894 ORTHO05D008724 7.8e-151 537.7 366 69.4
Aqoxy6G00238 Aquilegia oxysepala HOM05D006894 ORTHO05D008724 1.7e-150 536.6 364 70.3
AL2G15470 Arabidopsis lyrata HOM05D006894 ORTHO05D008724 1.7e-150 536.6 368 69.6
Cc02_g22630 Coffea canephora HOM05D006894 ORTHO05D008724 3.9e-150 535.4 383 70.5
A01p29780 Brassica napus HOM05D006894 ORTHO05D008724 3.6e-148 528.9 360 69.2
vmacro01754 Vaccinium macrocarpon HOM05D006894 ORTHO05D008724 3.6e-148 528.9 454 60.4
C01p37610 Brassica napus HOM05D006894 ORTHO05D008724 6.2e-148 528.1 360 69.4
BcaC09g49347 Brassica carinata HOM05D006894 ORTHO05D008724 1.4e-147 526.9 360 68.9
THA.LOC104809620 Tarenaya hassleriana HOM05D006894 ORTHO05D008724 3.1e-147 525.8 389 65.0
MSTRG.20303 Avicennia marina HOM05D006894 ORTHO05D008724 9.0e-147 524.2 373 69.7
DCAR_006702 Daucus carota HOM05D006894 ORTHO05D008724 1.2e-146 523.9 401 64.1
Lj4g0002387 Lotus japonicus HOM05D006894 ORTHO05D008724 4.5e-146 521.9 340 72.4
Aa31LG2G9600 Aethionema arabicum HOM05D006894 ORTHO05D008724 2.2e-145 519.6 376 66.0
FAN18G4164 Fragaria x ananassa HOM05D006894 ORTHO05D008724 4.6e-143 511.9 408 64.0
ATR0665G083 Amborella trichopoda HOM05D006894 ORTHO05D008724 1.3e-142 510.4 371 67.1
Sed0001229 Sechium edule HOM05D006894 ORTHO05D008724 5.1e-142 508.4 341 71.3
FvH4_5g29120 Fragaria vesca HOM05D006894 ORTHO05D008724 3.7e-140 502.3 371 67.1
CDE08G1218 Ceratophyllum demersum HOM05D006894 ORTHO05D008724 1.1e-139 500.7 366 65.8
Sc15g0002580 Simmondsia chinensis HOM05D006894 ORTHO05D008724 1.1e-139 500.7 370 65.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 7.6e-138 494.6 373 66.2
Actinidia39033 Actinidia chinensis HOM05D006894 ORTHO05D008724 1.3e-137 493.8 345 69.9
Rhsim11G0128300 Rhododendron simsii HOM05D006894 ORTHO05D008724 4.9e-137 491.9 387 63.8
FAN04G0479 Fragaria x ananassa HOM05D006894 ORTHO05D008724 1.1e-136 490.7 371 66.0
MBI06_g01072_MAGBIO Magnolia biondii HOM05D006894 ORTHO05D008724 3.3e-133 479.2 512 51.4
SEGI_07604 Sequoiadendron giganteum HOM05D006894 ORTHO05D008724 5.3e-131 471.9 368 62.2
BcaB04g20304 Brassica carinata HOM05D006894 ORTHO05D008724 3.4e-130 469.2 360 63.1
Dinv19376 Davidia involucrata HOM05D006894 ORTHO05D008724 9.3e-128 461.1 300 75.7
Actinidia30531 Actinidia chinensis HOM05D006894 ORTHO05D008724 2.1e-127 459.9 349 65.3
Mapoly0039s0108 Marchantia polymorpha HOM05D006894 ORTHO05D008724 1.5e-117 427.2 364 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1590 Anthoceros agrestis HOM05D006894 ORTHO05D007218 2.6e-114 416.4 347 58.2
Haze_01731 Corylus avellana HOM05D006894 ORTHO05D008724 3.4e-114 416.0 432 52.5
MELO3C014368.2 Cucumis melo HOM05D006894 ORTHO05D008724 7.7e-114 414.8 399 54.6
Pp3c9_20800 Physcomitrium patens HOM05D006894 ORTHO05D008724 2.2e-108 396.7 360 54.7
SMO119G0367 Selaginella moellendorffii HOM05D006894 ORTHO05D008724 1.2e-106 391.0 346 55.2
CSS0024184 Camellia sinensis var. sinensis HOM05D006894 ORTHO05D008724 4.2e-104 382.5 364 55.8
FAN13G2283 Fragaria x ananassa HOM05D006894 ORTHO05D008724 5.5e-104 382.1 371 55.3
CBR_g30837 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-101 372.1 397 48.6
BolC1t03726H Brassica oleracea HOM05D006894 ORTHO05D008724 6.1e-95 352.1 234 70.9
BraA01t03106Z Brassica rapa HOM05D006894 ORTHO05D008724 8.0e-95 351.7 234 70.9
unitig_749.g14128 Utricularia gibba HOM05D006894 ORTHO05D008724 1.4e-94 350.9 286 62.9
SEGI_10844 Sequoiadendron giganteum HOM05D006894 ORTHO05D008724 4.5e-82 309.3 325 50.8
Cre12.g552850 Chlamydomonas reinhardtii HOM05D006894 ORTHO05D008724 1.9e-67 260.8 376 39.6
Rhsim09G0048600 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.2e-66 258.1 352 43.5
Cpa.g.sc30.18 Carica papaya HOM05D006894 ORTHO05D008724 1.7e-49 201.1 129 72.9
ClCG09G014030 Citrullus lanatus HOM05D006894 ORTHO05D008724 4.0e-46 189.9 125 68.0
Rhsim09G0016000 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.0e-41 175.3 183 51.9
BcaB01g03502 Brassica carinata HOM05D006894 ORTHO05D008724 9.0e-38 162.2 148 57.4
BcaB05g23073 Brassica carinata HOM05D006894 ORTHO05D008724 3.8e-36 156.8 108 67.6
CAN.G798.10 Capsicum annuum HOM05D006894 ORTHO05D008724 2.2e-28 131.0 180 47.8
BcaB02g10691 Brassica carinata HOM05D000189 ORTHO05D000474 4.6e-26 123.2 178 42.1
Pp3c5_7230 Physcomitrium patens HOM05D006894 ORTHO05D008724 7.9e-26 122.5 185 42.2
ClCG09G014040 Citrullus lanatus HOM05D006894 ORTHO05D008724 5.1e-25 119.8 79 68.4
Cpa.g.sc30.19 Carica papaya HOM05D006894 ORTHO05D008724 1.5e-24 118.2 111 55.0
Solyc09g015460.3 Solanum lycopersicum HOM05D006894 ORTHO05D008724 1.6e-23 114.8 67 82.1
Duzib052G1224 Durio zibethinus HOM05D006894 ORTHO05D008724 2.4e-22 110.9 152 43.4
unitig_749.g14127 Utricularia gibba HOM05D006894 ORTHO05D008724 4.0e-22 110.2 76 69.7
PRCOL_00004673 Prasinoderma coloniale HOM05D006894 ORTHO05D008724 5.3e-22 109.8 375 26.7
ClCG09G014050 Citrullus lanatus HOM05D006894 ORTHO05D008724 7.1e-19 99.4 70 70.0
Glyma.08G127500 Glycine max HOM05D006894 ORTHO05D008724 1.3e-17 95.1 97 49.5
Cpa.g.sc3656.1 Carica papaya HOM05D006894 ORTHO05D008724 3.7e-15 87.0 62 67.7
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 6.2e-15 86.3 334 26.3
Peaxi162Scf01350g00016 Petunia axillaris HOM05D006894 ORTHO05D008724 1.1e-14 85.5 53 75.5
CDE06G1775 Ceratophyllum demersum HOM05D006894 ORTHO05D008724 3.3e-08 63.9 87 39.1
CAN.G536.1 Capsicum annuum HOM05D006894 ORTHO05D000067 1.3e-07 62.0 32 84.4


User provided reference genes

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