Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 2.4e-40 168.3 82 100.0
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 2.4e-40 168.3 82 100.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 9.2e-40 166.4 82 98.8
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.6e-39 164.1 82 96.3
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 7.8e-39 163.3 82 93.9
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.3e-38 162.5 80 93.8
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.1e-35 151.4 93 80.6
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 1.2e-34 149.4 117 69.2
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.2e-34 149.4 82 84.1
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 2.0e-34 148.7 78 84.6
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 3.4e-34 147.9 78 85.9
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 3.4e-34 147.9 78 84.6
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 4.4e-34 147.5 78 85.9
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 5.8e-34 147.1 81 81.5
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 7.6e-34 146.7 78 83.3
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 7.6e-34 146.7 82 84.1
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.6e-34 146.7 82 84.1
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.6e-34 146.7 82 84.1
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 7.6e-34 146.7 78 84.6
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.9e-34 146.4 82 82.9
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.3e-33 146.0 82 81.7
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-33 145.6 82 82.9
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 2.2e-33 145.2 78 83.3
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.2e-33 145.2 81 81.5
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 2.2e-33 145.2 82 81.7
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.9e-33 144.8 82 82.9
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 82.1
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.9e-33 144.8 82 80.5
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 3.8e-33 144.4 78 80.8
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 3.8e-33 144.4 78 83.3
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 4.9e-33 144.1 77 85.7
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 6.4e-33 143.7 80 78.8
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 6.4e-33 143.7 77 83.1
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 8.4e-33 143.3 77 81.8
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 8.4e-33 143.3 81 77.8
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 82.1
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 83.1
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.4e-32 142.5 77 81.8
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.4e-32 142.5 78 82.1
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.9e-32 142.1 77 81.8
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.9e-32 142.1 79 81.0
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.9e-32 142.1 79 79.7
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 1.9e-32 142.1 81 77.8
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 82.1
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 2.4e-32 141.7 82 78.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.4e-32 141.7 75 82.7
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 3.2e-32 141.4 78 79.5
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.2e-32 141.4 78 79.5
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 3.2e-32 141.4 77 81.8
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 3.2e-32 141.4 78 80.8
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 4.2e-32 141.0 75 82.7
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 4.2e-32 141.0 80 77.5
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 4.2e-32 141.0 78 80.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 9.3e-32 139.8 78 82.1
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 9.3e-32 139.8 78 79.5
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 9.3e-32 139.8 78 80.8
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 80.5
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.2e-31 139.4 81 77.8
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 2.7e-31 138.3 77 80.5
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.7e-31 138.3 79 82.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.7e-31 138.3 75 80.0
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 2.7e-31 138.3 78 79.5
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 3.5e-31 137.9 77 76.6
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 3.5e-31 137.9 81 75.3
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 3.5e-31 137.9 78 79.5
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 4.6e-31 137.5 79 82.3
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 4.6e-31 137.5 79 82.3
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 4.6e-31 137.5 78 78.2
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 6.0e-31 137.1 77 77.9
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.0e-31 137.1 82 81.7
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 6.0e-31 137.1 82 81.7
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 6.0e-31 137.1 78 78.2
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 82.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 7.8e-31 136.7 81 75.3
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.3e-30 136.0 77 76.6
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.3e-30 136.0 77 76.6
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.3e-30 136.0 79 82.3
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.3e-30 136.0 75 80.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 3.9e-30 134.4 77 75.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 3.9e-30 134.4 77 75.3
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 3.9e-30 134.4 78 74.4
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 5.1e-30 134.0 79 79.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 5.1e-30 134.0 79 79.7
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 5.1e-30 134.0 75 80.0
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 6.6e-30 133.7 79 79.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 6.6e-30 133.7 79 79.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 6.6e-30 133.7 79 79.7
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 1.1e-29 132.9 81 72.8
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 2.5e-29 131.7 82 72.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 4.3e-29 131.0 75 80.0
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 5.6e-29 130.6 75 80.0
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 5.6e-29 130.6 75 80.0
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 5.6e-29 130.6 81 71.6
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 9.6e-29 129.8 75 78.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 9.6e-29 129.8 75 78.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 9.6e-29 129.8 75 78.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.1e-27 126.3 94 63.8
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-27 126.3 82 75.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-27 126.3 64 93.8
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.5e-26 122.5 71 81.7
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.5e-26 120.9 71 80.3
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 6.4e-25 117.1 63 85.7
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.1e-24 116.3 66 78.8
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.4e-24 115.2 61 78.7
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.4e-24 115.2 73 79.5
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.2e-24 114.8 67 77.6
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.2e-24 114.8 73 78.1
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 7.1e-24 113.6 69 75.4
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.3e-24 113.2 63 82.5
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 9.3e-24 113.2 68 77.9
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.2e-23 112.8 61 85.2
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 2.1e-23 112.1 67 73.1
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 4.6e-23 110.9 68 70.6
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 1.1e-21 106.3 72 73.6
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.5e-21 105.9 74 60.8
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 3.7e-20 101.3 63 79.4
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 4.8e-20 100.9 63 77.8
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.8e-20 100.9 63 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 6.2e-20 100.5 77 57.1
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 1.1e-19 99.8 50 74.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.4e-19 98.6 62 72.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.5e-18 95.9 50 76.0
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.0e-17 93.2 61 67.2
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.0e-17 93.2 61 67.2
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 3.8e-17 91.3 49 77.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 3.8e-17 91.3 49 77.6
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 2.5e-16 88.6 73 60.3
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 4.2e-16 87.8 66 60.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 1.6e-15 85.9 49 79.6
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 7.4e-13 77.0 44 93.2
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 9.0e-11 70.1 35 77.1
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 4.5e-10 67.8 38 71.1
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.5e-10 67.8 59 55.9
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 5.8e-10 67.4 71 42.3
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 3.8e-09 64.7 47 59.6
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.1e-08 63.2 36 66.7
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 5.1e-06 54.3 36 69.4


User provided reference genes

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