Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 2171.7 1084 100.0
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 2152.9 1084 99.0
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 2140.9 1084 98.2
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 2055.8 1084 94.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 2013.0 1094 91.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1969.9 1080 89.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1824.3 1081 85.1
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1733.4 1087 78.3
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1703.7 1080 77.1
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1695.2 1088 76.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1694.9 1073 77.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1686.8 1087 75.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1083 75.7
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 1085 75.0
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1081 75.9
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1671.8 1089 75.3
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1090 74.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1088 75.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1664.4 1088 75.3
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1656.3 1115 73.5
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1653.3 1102 74.5
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1650.2 1077 75.6
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1645.6 1085 74.6
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1644.4 1084 74.4
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1638.6 1083 74.1
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1633.2 1090 73.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1631.7 1078 74.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1087 73.8
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1629.4 1092 73.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1629.0 1074 75.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1074 74.1
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1620.9 1087 73.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1620.9 1150 70.8
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1615.1 1091 72.9
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1087 72.5
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1078 73.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1081 72.3
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1605.9 1086 72.6
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1089 72.9
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1080 73.1
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1085 72.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1073 73.6
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1599.7 1083 72.3
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1084 71.4
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1595.9 1087 73.5
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1081 72.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1083 72.5
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1592.0 1091 71.5
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1083 71.7
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1590.1 1083 71.2
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1066 73.0
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1074 71.9
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1103 70.4
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1086 71.2
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1084 70.6
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1086 71.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1088 71.4
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1105 70.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1084 71.3
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1172 67.7
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1086 71.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1109 71.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1075 71.2
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1083 71.1
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1084 71.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1079 70.3
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1091 70.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1083 70.3
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1083 70.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1083 70.5
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1074 71.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1074 71.2
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1169 67.6
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1074 71.2
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1547.7 1085 71.2
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 996 75.4
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1074 71.0
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1085 71.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1076 70.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1082 68.8
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1082 68.8
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1077 70.3
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1530.0 1015 73.9
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1528.8 1094 69.7
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1526.5 1075 70.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1078 69.3
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1520.4 1075 70.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1519.6 1075 70.0
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 1075 70.0
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1518.8 1075 69.9
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1518.8 1075 70.0
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1518.1 1074 70.2
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1516.5 1083 68.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 1075 70.0
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 1075 70.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 1075 69.6
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 1068 69.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1076 69.4
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1077 70.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1509.6 1076 68.6
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1507.3 1083 68.6
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1086 68.8
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1483.4 1050 69.4
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1481.8 1108 66.2
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1476.5 1108 66.1
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1473.0 1075 66.4
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1442.6 995 72.0
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1424.5 1097 63.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1423.7 980 72.0
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1376.3 1082 65.0
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1345.1 1080 65.1
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1226.1 790 76.1
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1177.5 697 83.6
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1173.3 1075 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1171.4 1088 54.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1152.9 1117 51.6
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1136.3 717 79.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1135.2 678 82.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 1077 52.4
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 751 74.2
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 1078 53.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 4.5e-291 1005.0 836 60.0
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.0e-274 950.7 817 60.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.7e-258 896.7 613 73.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.7e-253 880.2 951 48.4
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.0e-251 873.2 637 71.0
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.2e-246 857.4 506 82.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.4e-220 770.0 631 60.9
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.0e-214 750.4 987 46.2
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 6.4e-197 692.2 609 59.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.1e-163 579.3 447 65.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.5e-156 557.4 311 84.6
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.2e-131 475.3 383 62.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.3e-130 471.1 313 73.2
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.3e-72 279.3 292 51.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 6.9e-66 256.9 240 54.6
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.2e-64 251.9 205 63.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.8e-61 242.3 136 79.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.3e-51 209.5 138 68.8
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.8e-35 155.2 160 53.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.4e-33 148.3 133 54.9
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 2.7e-30 138.7 156 48.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.9e-29 134.8 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 9.7e-28 130.2 105 59.0
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 7.7e-25 120.6 97 63.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 5.5e-23 114.4 88 64.8
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.3e-13 82.4 76 46.1
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 8.8e-13 80.5 49 69.4
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 6.3e-11 74.3 147 35.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 3.1e-10 72.0 48 70.8
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.5e-09 68.6 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 39 74.4


User provided reference genes

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