Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 2.0e-147 525.8 273 100.0
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 3.9e-127 458.4 276 90.2
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 1.5e-118 429.9 287 84.0
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 2.7e-67 259.6 273 59.0
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.5e-62 243.8 226 64.2
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 9.5e-57 224.6 240 53.8
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 8.9e-55 218.0 270 52.2
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 1.5e-54 217.2 273 48.7
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 7.5e-54 214.9 236 51.7
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 8.3e-53 211.5 238 50.4
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 1.1e-52 211.1 157 67.5
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 4.1e-52 209.1 226 52.7
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 7.1e-52 208.4 257 47.1
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.2e-51 207.6 266 47.7
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 1.6e-51 207.2 277 47.3
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 1.6e-51 207.2 165 66.7
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 2.7e-51 206.5 234 53.0
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 2.7e-51 206.5 237 50.2
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 6.0e-51 205.3 265 46.4
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.7e-50 203.8 230 50.0
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 3.0e-50 203.0 258 46.5
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 6.6e-50 201.8 163 63.2
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 6.6e-50 201.8 173 60.7
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 8.6e-50 201.4 225 50.2
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 1.1e-49 201.1 255 49.4
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 1.9e-49 200.3 235 49.4
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 2.5e-49 199.9 264 47.0
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 3.3e-49 199.5 180 56.7
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 9.6e-49 198.0 335 40.6
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 9.6e-49 198.0 253 48.2
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 1.2e-48 197.6 282 46.8
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 2.1e-48 196.8 257 46.7
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 8.1e-48 194.9 195 53.8
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.8e-47 193.7 162 59.3
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 2.4e-47 193.4 277 44.0
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 4.0e-47 192.6 160 60.0
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 4.0e-47 192.6 161 60.2
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 8.9e-47 191.4 250 48.0
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.2e-46 191.0 270 46.7
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 2.0e-46 190.3 245 48.6
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 2.0e-46 190.3 225 48.9
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.6e-46 189.9 275 45.1
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 4.4e-46 189.1 277 45.8
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 7.6e-46 188.3 163 59.5
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.7e-45 187.2 277 42.2
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 2.2e-45 186.8 218 53.7
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 6.4e-45 185.3 120 71.7
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 8.4e-45 184.9 268 42.5
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 1.4e-44 184.1 268 43.3
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 1.4e-44 184.1 268 43.3
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 1.4e-44 184.1 268 43.3
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.4e-44 182.2 236 47.9
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 7.1e-44 181.8 232 47.8
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.7e-43 179.9 268 42.5
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.7e-43 179.9 228 47.4
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 4.6e-43 179.1 230 45.7
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 7.8e-43 178.3 126 67.5
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 1.0e-42 177.9 222 48.6
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.3e-42 176.8 225 47.6
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 3.0e-42 176.4 228 47.4
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 6.6e-42 175.3 244 43.4
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 1.1e-41 174.5 303 41.6
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 1.5e-41 174.1 225 46.2
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 7.3e-41 171.8 222 44.6
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 9.6e-41 171.4 231 48.1
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 1.3e-40 171.0 281 40.9
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 1.8e-39 167.2 175 53.1
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 1.8e-39 167.2 306 39.2
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 2.4e-39 166.8 238 44.1
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 3.1e-39 166.4 174 51.7
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 5.3e-39 165.6 212 47.6
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 1.2e-38 164.5 273 41.8
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 1.5e-38 164.1 242 43.4
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 4.4e-38 162.5 235 43.8
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 5.8e-38 162.2 277 41.2
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 9.9e-38 161.4 120 65.0
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 6.4e-37 158.7 239 41.4
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 8.4e-37 158.3 145 54.5
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 1.4e-36 157.5 231 46.3
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 7.8e-35 151.8 121 61.2
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 5.1e-34 149.1 136 50.7
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.5e-30 137.5 225 41.3
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 4.5e-30 136.0 238 39.5
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 1.3e-29 134.4 266 36.1
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.9e-29 133.3 114 54.4
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.6e-27 127.5 131 50.4
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 1.0e-26 124.8 225 37.3
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 5.1e-26 122.5 119 52.9
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.9e-25 120.6 123 52.0
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.9e-25 120.6 259 32.4
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.8e-24 116.7 153 44.4
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 3.1e-23 113.2 226 35.4
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 2.6e-22 110.2 253 34.4
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 2.2e-21 107.1 157 42.0
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.5e-09 67.0 39 74.4
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 2.4e-07 60.5 30 83.3
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 2.4e-07 60.5 53 52.8
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 3.1e-07 60.1 151 37.1
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 6.9e-07 58.9 163 31.9
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.0e-06 57.4 151 34.4


User provided reference genes

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