Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 4.6e-35 150.6 72 100.0
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 4.6e-35 150.6 72 100.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.3e-34 149.1 72 98.6
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.9e-34 147.5 72 97.2
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.2e-32 140.2 72 91.7
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 2.4e-31 138.3 72 93.1
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 5.1e-26 120.6 58 93.1
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 4.3e-25 117.5 64 85.9
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 3.7e-24 114.4 72 73.6
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 2.4e-23 111.7 72 73.6
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 6.9e-23 110.2 72 75.0
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 74.0
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 9.0e-23 109.8 69 76.8
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.2e-22 109.4 61 82.0
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.2e-22 109.4 61 82.0
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-22 109.4 59 83.1
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 1.5e-22 109.0 72 69.4
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.0e-22 108.6 72 73.6
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 4.5e-22 107.5 57 82.5
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 4.5e-22 107.5 61 78.7
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-21 105.9 72 72.2
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.3e-21 105.9 71 73.2
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.3e-21 105.9 73 74.0
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.3e-21 105.9 73 74.0
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.7e-21 105.5 62 77.4
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.2e-21 105.1 72 70.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.9e-21 104.8 73 67.1
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 2.9e-21 104.8 67 71.6
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.0e-21 104.0 56 82.1
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 6.5e-21 103.6 63 76.2
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 6.5e-21 103.6 72 72.2
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 6.5e-21 103.6 73 71.2
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 6.5e-21 103.6 67 71.6
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 8.4e-21 103.2 72 68.1
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-20 102.4 63 74.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.4e-20 102.4 72 69.4
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.9e-20 102.1 76 68.4
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.9e-20 102.1 72 72.2
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.5e-20 101.7 73 68.5
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.5e-20 101.7 73 68.5
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 2.5e-20 101.7 63 74.6
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 2.5e-20 101.7 63 74.6
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 2.5e-20 101.7 63 74.6
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 74 68.9
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 74 68.9
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.5e-20 101.7 74 68.9
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 2.5e-20 101.7 62 77.4
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 3.2e-20 101.3 72 68.1
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 3.2e-20 101.3 70 68.6
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 4.2e-20 100.9 71 67.6
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 5.5e-20 100.5 63 73.0
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 5.5e-20 100.5 63 73.0
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 5.5e-20 100.5 63 73.0
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 5.5e-20 100.5 73 67.1
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 5.5e-20 100.5 63 73.0
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 5.5e-20 100.5 63 73.0
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 5.5e-20 100.5 69 66.7
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 7.1e-20 100.1 73 67.1
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 7.1e-20 100.1 75 68.0
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 7.1e-20 100.1 71 69.0
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 9.3e-20 99.8 63 71.4
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 9.3e-20 99.8 71 69.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.3e-20 99.8 73 67.1
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.3e-20 99.8 72 65.3
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.2e-19 99.4 73 65.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.6e-19 99.0 70 64.3
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 2.1e-19 98.6 73 68.5
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.1e-19 98.6 63 73.0
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.1e-19 98.6 67 71.6
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.1e-19 98.6 62 72.6
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 2.1e-19 98.6 53 83.0
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 2.1e-19 98.6 74 66.2
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.7e-19 98.2 62 71.0
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.7e-19 98.2 61 72.1
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 6.1e-19 97.1 62 72.6
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 6.1e-19 97.1 61 70.5
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.9e-19 96.7 72 65.3
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 7.9e-19 96.7 63 68.3
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.3e-18 95.9 60 73.3
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.3e-18 95.9 57 75.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.3e-18 95.9 57 75.4
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 2.3e-18 95.1 69 66.7
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.0e-18 94.7 70 60.0
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 5.1e-18 94.0 66 68.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.7e-18 93.6 73 63.0
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.7e-18 93.6 53 77.4
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 6.7e-18 93.6 58 72.4
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 8.7e-18 93.2 58 70.7
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.5e-17 92.4 66 68.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.9e-17 92.0 57 73.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.9e-17 92.0 57 73.7
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.3e-17 91.3 47 87.2
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 4.3e-17 90.9 54 79.6
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 5.7e-17 90.5 54 75.9
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 9.7e-17 89.7 70 61.4
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 9.7e-17 89.7 70 61.4
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 9.7e-17 89.7 74 64.9
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 2.2e-16 88.6 47 85.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.8e-16 88.2 60 66.7
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 2.8e-16 88.2 60 71.7
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.8e-16 87.4 60 68.3
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 8.2e-16 86.7 66 66.7
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 8.2e-16 86.7 69 62.3
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 8.2e-16 86.7 54 70.4
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 1.1e-15 86.3 62 66.1
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.4e-15 85.1 45 80.0
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 5.3e-15 84.0 62 61.3
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 9.0e-15 83.2 73 58.9
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 9.0e-15 83.2 62 62.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.2e-14 82.8 74 59.5
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 2.0e-14 82.0 47 72.3
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 2.6e-14 81.6 54 64.8
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.4e-14 81.3 74 58.1
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 1.4e-12 75.9 62 61.3
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.2e-12 74.7 58 62.1
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 4.2e-12 74.3 37 86.5
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.2e-12 73.6 62 54.8
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 3.6e-11 71.2 45 66.7
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.5e-09 65.1 46 58.7
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 7.4e-09 63.5 45 57.8
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 9.7e-09 63.2 30 86.7
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.1e-07 58.2 54 46.3
Nitab4.5_0003439g0030 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.5e-06 55.8 45 60.0
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 3.4e-06 54.7 55 43.6
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 5.9e-06 53.9 52 50.0


User provided reference genes

Program Settings