Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 1.2e-83 313.2 158 100.0
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 3.2e-81 305.1 158 98.7
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 1.5e-46 189.9 160 70.0
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 3.2e-20 102.4 154 47.4
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 6.0e-19 98.2 147 48.3
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 6.6e-18 94.7 150 45.3
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 1.1e-17 94.0 104 47.1
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 1.9e-17 93.2 128 46.1
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 3.3e-17 92.4 121 47.9
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 3.3e-17 92.4 121 47.9
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 2.8e-16 89.4 119 47.9
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 3.6e-16 89.0 93 55.9
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 6.2e-16 88.2 119 47.1
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 8.1e-16 87.8 61 65.6
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 1.8e-15 86.7 54 79.6
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 4.0e-15 85.5 123 43.1
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 5.2e-15 85.1 58 65.5
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 5.2e-15 85.1 94 55.3
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 8.9e-15 84.3 109 46.8
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 2.6e-14 82.8 121 44.6
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 3.4e-14 82.4 55 65.5
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 4.4e-14 82.0 97 48.5
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 5.8e-14 81.6 145 42.1
Peaxi162Scf00071g00119 Petunia axillaris HOM05D008155 ORTHO05D050235 9.8e-14 80.9 93 58.1
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 1.7e-13 80.1 154 40.3
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 2.2e-13 79.7 137 38.0
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 2.9e-13 79.3 56 66.1
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 3.7e-13 79.0 131 41.2
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 6.4e-13 78.2 103 44.7
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 8.3e-13 77.8 56 64.3
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 1.1e-12 77.4 97 44.3
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 1.4e-12 77.0 154 39.6
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 3.2e-12 75.9 125 43.2
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 2.1e-11 73.2 139 40.3
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 2.7e-11 72.8 148 38.5
Sed0026568 Sechium edule HOM05D008155 ORTHO05D010411 3.5e-11 72.4 94 47.9
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 6.0e-11 71.6 136 39.7
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 1.3e-10 70.5 60 58.3
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 3.0e-10 69.3 131 40.5
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 3.9e-10 68.9 111 42.3
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 5.1e-10 68.6 113 38.9
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 5.1e-10 68.6 137 40.1
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 6.6e-10 68.2 60 56.7
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 6.6e-10 68.2 153 36.6
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 8.6e-10 67.8 116 38.8
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 1.5e-09 67.0 54 51.9
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 1.5e-09 67.0 57 50.9
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 1.6e-08 63.5 163 38.7
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 3.6e-08 62.4 129 41.1
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 4.7e-08 62.0 103 35.9
Aa31LG11G10020 Aethionema arabicum HOM05D008255 ORTHO05D011943 6.2e-08 61.6 92 40.2
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 8.1e-08 61.2 178 32.0
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.4e-07 60.5 103 37.9
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 1.8e-07 60.1 114 41.2
THA.LOC104802769 Tarenaya hassleriana HOM05D008255 ORTHO05D011943 4.0e-07 58.9 57 52.6
unitig_747.g21289 Utricularia gibba HOM05D008155 ORTHO05D010411 4.0e-07 58.9 48 54.2
Sp2g21360 Schrenkiella parvula HOM05D008255 ORTHO05D011943 6.8e-07 58.2 59 50.8
BcaNung03958 Brassica carinata HOM05D008255 ORTHO05D011943 8.9e-07 57.8 75 44.0
Ah.03g147790 Amaranthus hybridus HOM05D008155 ORTHO05D010411 1.2e-06 57.4 94 33.0
Lsat_1_v5_gn_5_146861 Lactuca sativa HOM05D008155 ORTHO05D010411 1.2e-06 57.4 137 37.2
Thhalv10005106m.g Eutrema salsugineum HOM05D008255 ORTHO05D011943 2.0e-06 56.6 118 34.7
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 2.6e-06 56.2 158 34.2
Lsat_1_v5_gn_1_75801 Lactuca sativa HOM05D008155 ORTHO05D010411 3.4e-06 55.8 109 39.4
C07p41630 Brassica napus HOM05D008255 ORTHO05D011943 5.8e-06 55.1 35 68.6
CARHR186950 Cardamine hirsuta HOM05D008255 ORTHO05D011943 5.8e-06 55.1 82 45.1
EL10Ac6g15313 Beta vulgaris HOM05D008155 ORTHO05D010411 7.6e-06 54.7 96 37.5


User provided reference genes

Program Settings