Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g101150.3 Solanum lycopersicum HOM05D007830 ORTHO05D009947 1.6e-153 547.0 534 100.0
PGSC0003DMG400018287 Solanum tuberosum HOM05D007830 ORTHO05D009947 1.6e-79 301.2 247 66.4
Peaxi162Scf00357g00014 Petunia axillaris HOM05D007830 ORTHO05D009947 3.9e-78 296.6 520 62.7
CAN.G1248.21 Capsicum annuum HOM05D007830 ORTHO05D009947 7.3e-77 292.4 529 59.9
Sopen01g044630 Solanum pennellii HOM05D007830 ORTHO05D009947 8.0e-76 288.9 529 80.3
Nitab4.5_0002485g0040 Nicotiana tabacum HOM05D007830 ORTHO05D009947 2.6e-58 230.7 247 61.1
Nitab4.5_0005904g0050 Nicotiana tabacum HOM05D007830 ORTHO05D009947 2.4e-56 224.2 530 45.3
Hma1.2p1_0052F.1_g030410 Hydrangea macrophylla HOM05D007830 ORTHO05D009947 1.1e-32 145.6 182 43.4
CDE05G0555 Ceratophyllum demersum HOM05D007830 ORTHO05D009947 2.5e-29 134.4 242 34.7
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 3.1e-27 127.5 456 54.4
Lsat_1_v5_gn_7_63920 Lactuca sativa HOM05D007830 ORTHO05D009947 1.7e-25 121.7 247 34.4
HanXRQChr03g0088351 Helianthus annuus HOM05D007830 ORTHO05D009947 8.4e-25 119.4 183 36.6
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 1.6e-23 115.2 247 38.5
Thecc.05G329100 Theobroma cacao HOM05D007830 ORTHO05D009947 1.1e-21 109.0 436 53.7
COL.COLO4_05513 Corchorus olitorius HOM05D007830 ORTHO05D009947 9.7e-21 105.9 163 36.2
Dinv24509 Davidia involucrata HOM05D007830 ORTHO05D009947 4.8e-20 103.6 374 62.6
TWI56G0273 Tripterygium wilfordii HOM05D007830 ORTHO05D009947 9.0e-19 99.4 101 47.5
Cc02_g35800 Coffea canephora HOM05D007830 ORTHO05D009947 1.0e-17 95.9 96 53.1
Haze_03995 Corylus avellana HOM05D007830 ORTHO05D009947 1.7e-17 95.1 101 44.6
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 3.8e-17 94.0 101 49.5
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 5.0e-17 93.6 353 51.8
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 8.5e-17 92.8 97 51.5
Lj5g0007590 Lotus japonicus HOM05D007830 ORTHO05D009947 1.4e-16 92.0 92 52.2
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 1.9e-16 91.7 101 45.5
Os03g0795400 Oryza sativa ssp. japonica HOM05D007830 ORTHO05D009947 1.9e-16 91.7 156 32.1
Cfa006760 Carpinus fangiana HOM05D007830 ORTHO05D009947 5.5e-16 90.1 95 46.3
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 1.2e-15 89.0 92 48.9
TPR.G2587 Trifolium pratense HOM05D007830 ORTHO05D009947 1.6e-15 88.6 92 48.9
Psat6g155440 Pisum sativum HOM05D007830 ORTHO05D009947 2.1e-15 88.2 92 47.8
PGR031G1570 Punica granatum HOM05D007830 ORTHO05D009947 2.7e-15 87.8 89 47.2
QL03p010264 Quercus lobata HOM05D007830 ORTHO05D009947 2.7e-15 87.8 101 40.6
Phvul.007G204600 Phaseolus vulgaris HOM05D007830 ORTHO05D009947 4.6e-15 87.0 101 44.6
RcHm_v2.0_Chr3g0458391 Rosa chinensis HOM05D007830 ORTHO05D009947 6.1e-15 86.7 71 60.6
FvH4_6g08430 Fragaria vesca HOM05D007830 ORTHO05D009947 7.9e-15 86.3 71 60.6
FAN05G5807 Fragaria x ananassa HOM05D007830 ORTHO05D009947 7.9e-15 86.3 71 59.2
FAN14G2917 Fragaria x ananassa HOM05D007830 ORTHO05D009947 7.9e-15 86.3 71 60.6
FAN09G0226 Fragaria x ananassa HOM05D007830 ORTHO05D009947 1.0e-14 85.9 71 59.2
Ca_10196_v3 Cicer arietinum L. HOM05D007830 ORTHO05D009947 1.8e-14 85.1 95 44.2
FAN02G3946 Fragaria x ananassa HOM05D007830 ORTHO05D009947 1.8e-14 85.1 71 59.2
Ciclev10011168m.g Citrus clementina HOM05D007830 ORTHO05D009947 3.0e-14 84.3 81 49.4
Glyma.20G092100 Glycine max HOM05D007830 ORTHO05D009947 3.0e-14 84.3 92 47.8
Eucgr.H01319 Eucalyptus grandis HOM05D007830 ORTHO05D009947 5.1e-14 83.6 89 46.1
Prupe.6G305500 Prunus persica HOM05D007830 ORTHO05D009947 6.7e-14 83.2 71 57.7
Potri.005G003200 Populus trichocarpa HOM05D007830 ORTHO05D009947 2.0e-13 81.6 89 44.9
Manes.09G180800 Manihot esculenta HOM05D007830 ORTHO05D009947 2.5e-13 81.3 73 56.2
Gohir.D11G285900 Gossypium hirsutum HOM05D007830 ORTHO05D009947 3.3e-13 80.9 73 56.2
Gorai.007G309100 Gossypium raimondii HOM05D007830 ORTHO05D009947 3.3e-13 80.9 73 56.2
Lj5P319T39 Lonicera japonica HOM05D007830 ORTHO05D009947 5.7e-13 80.1 73 56.2
Sabra05G0000600 Salix brachista HOM05D007830 ORTHO05D009947 7.4e-13 79.7 89 43.8
Sabra05G0014700 Salix brachista HOM05D007830 ORTHO05D009947 7.4e-13 79.7 89 43.8
DCAR_029288 Daucus carota HOM05D007830 ORTHO05D009947 1.3e-12 79.0 132 34.1
Ah.10g026910 Amaranthus hybridus HOM05D007830 ORTHO05D009947 2.2e-12 78.2 73 52.1
Duzib128G1385 Durio zibethinus HOM05D007830 ORTHO05D009947 2.8e-12 77.8 100 42.0
MELO3C009562.2 Cucumis melo HOM05D007830 ORTHO05D009947 3.7e-12 77.4 95 43.2
QL03p010498 Quercus lobata HOM05D007830 ORTHO05D009947 3.7e-12 77.4 89 39.3
AUR62006810 Chenopodium quinoa HOM05D007830 ORTHO05D009947 4.8e-12 77.0 76 51.3
CsaV3_3G038190 Cucumis sativus L. HOM05D007830 ORTHO05D009947 4.8e-12 77.0 100 41.0
MD04G1187000 Malus domestica HOM05D007830 ORTHO05D009947 6.3e-12 76.6 71 57.7
ClCG10G018110 Citrullus lanatus HOM05D007830 ORTHO05D009947 8.2e-12 76.3 100 40.0
Gohir.A11G275500 Gossypium hirsutum HOM05D007830 ORTHO05D009947 1.1e-11 75.9 73 53.4
MD12G1200400 Malus domestica HOM05D007830 ORTHO05D009947 1.8e-11 75.1 89 41.6
Lalb_Chr18g0046201 Lupinus albus HOM05D007830 ORTHO05D009947 2.4e-11 74.7 72 54.2
CANSAT54G0214 Cannabis sativa HOM05D007830 ORTHO05D009947 4.1e-11 73.9 118 33.9
Aqoxy2G02518 Aquilegia oxysepala HOM05D007830 ORTHO05D009947 5.3e-11 73.6 70 52.9
Sed0014604 Sechium edule HOM05D007830 ORTHO05D009947 6.9e-11 73.2 72 51.4
FAN08G2598 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.2e-10 72.4 106 34.0
PSO210G0421 Papaver somniferum HOM05D007830 ORTHO05D009947 1.5e-10 72.0 73 54.8
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 1.5e-10 72.0 73 54.8
AUR62000469 Chenopodium quinoa HOM05D007830 ORTHO05D009947 2.6e-10 71.2 76 47.4
FAN04G0992 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.4e-10 70.9 94 34.0
Migut.B00878 Erythranthe guttata HOM05D007830 ORTHO05D009947 4.5e-10 70.5 82 39.0
PGR031G2669 Punica granatum HOM05D007830 ORTHO05D009947 5.9e-10 70.1 65 50.8
SGA_v2.0_scaffold117G32413 Striga asiatica HOM05D007830 ORTHO05D009947 5.9e-10 70.1 84 44.0
unitig_578.g15943 Utricularia gibba HOM05D007830 ORTHO05D009947 7.7e-10 69.7 97 38.1
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 1.7e-09 68.6 240 22.9
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.2e-09 68.2 123 28.5
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.9e-09 67.8 232 24.6
Potri.013G002800 Populus trichocarpa HOM05D007830 ORTHO05D009947 2.9e-09 67.8 74 51.4
VMungo0720G1493 Vigna mungo HOM05D007830 ORTHO05D009947 3.8e-09 67.4 71 54.9
Glyma.20G092800 Glycine max HOM05D007830 ORTHO05D009947 6.5e-09 66.6 59 45.8
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 1.1e-08 65.9 220 22.7
Hund21836 Selenicereus undatus HOM05D007830 ORTHO05D009947 1.1e-08 65.9 71 49.3
Nn3g21915 Nelumbo nucifera HOM05D007830 ORTHO05D009947 1.4e-08 65.5 90 41.1
MBI06_g27503_MAGBIO Magnolia biondii HOM05D007830 ORTHO05D009947 3.2e-08 64.3 71 47.9
ATR0796G327 Amborella trichopoda HOM05D007830 ORTHO05D009947 1.2e-07 62.4 72 43.1
Zm00001eb060630 Zea mays HOM05D007830 ORTHO05D009947 2.1e-07 61.6 71 47.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 3.6e-07 60.8 224 23.2
PGR142G1500 Punica granatum HOM05D007202 ORTHO05D009125 3.6e-07 60.8 99 35.4
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 4.7e-07 60.5 120 25.0
FvH4_5g25662 Fragaria vesca HOM05D000424 ORTHO05D000355 7.9e-07 59.7 79 35.4
Sc04g0005770 Simmondsia chinensis HOM05D000424 ORTHO05D000355 7.9e-07 59.7 91 36.3
Actinidia09334 Actinidia chinensis HOM05D007830 ORTHO05D009947 1.0e-06 59.3 57 50.9
QL09p009182 Quercus lobata HOM05D006156 ORTHO05D007699 1.0e-06 59.3 227 22.9
QL11p003913 Quercus lobata HOM05D002007 ORTHO05D000355 1.0e-06 59.3 248 22.6
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 1.4e-06 58.9 118 28.8
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 1.4e-06 58.9 244 21.7
RcHm_v2.0_Chr7g0216011 Rosa chinensis HOM05D000424 ORTHO05D000355 1.4e-06 58.9 98 31.6
TPR.G19387 Trifolium pratense HOM05D006156 ORTHO05D007699 1.4e-06 58.9 222 23.0
Actinidia03863 Actinidia chinensis HOM05D006596 ORTHO05D008497 1.8e-06 58.5 121 25.6
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 1.8e-06 58.5 121 25.6
Gohir.D05G171300 Gossypium hirsutum HOM05D007956 ORTHO05D010152 1.8e-06 58.5 244 21.7
MD02G1151200 Malus domestica HOM05D000891 ORTHO05D000761 1.8e-06 58.5 119 26.9
Gohir.A05G168200 Gossypium hirsutum HOM05D007956 ORTHO05D010152 2.3e-06 58.2 244 21.7
PGSC0003DMG400040010 Solanum tuberosum HOM05D000891 ORTHO05D000761 2.3e-06 58.2 115 27.0
Lsat_1_v5_gn_4_109161 Lactuca sativa HOM05D007937 ORTHO05D010000 3.0e-06 57.8 268 23.9
SalBow6G4978 Salvia bowleyana HOM05D000424 ORTHO05D000355 3.0e-06 57.8 125 26.4
DCAR_020027 Daucus carota HOM05D016234 ORTHO05D016483 3.9e-06 57.4 223 25.1
QL09p032747 Quercus lobata HOM05D000424 ORTHO05D000355 3.9e-06 57.4 79 35.4
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 5.1e-06 57.0 244 21.7
TWI79G1119 Tripterygium wilfordii HOM05D005362 ORTHO05D000355 5.1e-06 57.0 80 37.5
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 6.7e-06 56.6 235 24.3
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 6.7e-06 56.6 114 24.6
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 6.7e-06 56.6 126 28.6
Lsat_1_v5_gn_2_18861 Lactuca sativa HOM05D006156 ORTHO05D007699 8.8e-06 56.2 191 25.1


User provided reference genes

Program Settings