Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.8e-220 768.8 361 100.0
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.4e-219 764.6 361 98.9
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 8.6e-215 750.0 361 96.7
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.2e-205 717.2 367 91.0
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.6e-198 694.1 365 87.9
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.6e-197 692.6 355 88.7
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.4e-196 688.7 369 86.4
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.1e-167 591.3 359 73.8
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 7.7e-163 577.4 355 71.5
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.5e-161 572.4 349 73.1
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.2e-161 572.0 355 70.7
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.1e-160 569.3 355 70.4
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.1e-160 569.3 351 71.2
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.5e-158 563.1 359 71.3
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 4.3e-158 561.6 356 70.2
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.3e-154 550.1 355 69.6
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.7e-154 549.7 356 68.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.2e-154 549.3 356 71.6
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.2e-152 543.5 359 68.2
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.4e-151 540.0 357 67.8
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 6.7e-151 537.7 354 69.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 8.8e-151 537.3 355 67.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.1e-150 537.0 359 66.3
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.6e-150 535.8 361 66.5
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.4e-150 535.0 356 67.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.4e-150 534.3 357 68.1
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.3e-149 533.5 358 67.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.7e-149 533.1 357 67.8
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 6.3e-149 531.2 345 69.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.2e-149 530.8 355 66.8
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.2e-149 530.8 355 66.8
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.1e-148 530.4 359 66.6
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 3.1e-148 528.9 355 66.5
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 5.3e-148 528.1 352 67.0
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 7.0e-148 527.7 356 66.6
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 9.1e-148 527.3 352 67.0
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.6e-147 525.8 352 68.2
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 2.6e-147 525.8 341 69.5
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 2.6e-147 525.8 340 67.6
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.5e-147 525.4 355 65.9
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.9e-147 524.6 341 68.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 7.7e-147 524.2 356 66.3
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.3e-146 523.5 354 65.0
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.5e-145 520.0 355 65.6
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-145 519.2 355 65.9
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.5e-145 518.1 350 66.0
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 9.4e-145 517.3 358 64.0
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 2.7e-144 515.8 341 67.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 4.7e-144 515.0 360 64.2
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 4.7e-144 515.0 355 64.5
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.3e-143 512.7 358 62.6
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 2.3e-143 512.7 343 66.5
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.3e-143 512.7 307 72.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 5.2e-143 511.5 357 63.6
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 6.7e-143 511.1 355 63.9
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 6.7e-143 511.1 351 64.7
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 6.7e-143 511.1 358 65.6
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 8.8e-143 510.8 360 63.6
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.5e-142 510.0 354 64.1
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.5e-142 510.0 360 62.8
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.5e-142 510.0 360 63.1
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 3.3e-142 508.8 443 55.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 7.5e-142 507.7 358 63.1
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 9.7e-142 507.3 359 63.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.3e-141 506.9 359 63.2
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.3e-141 506.9 359 63.2
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.7e-141 506.5 357 64.4
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 2.2e-141 506.1 355 63.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.2e-141 506.1 359 62.4
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.2e-141 506.1 364 63.5
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 4.8e-141 505.0 358 61.7
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 6.3e-141 504.6 359 63.5
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.8e-140 503.1 355 64.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.8e-140 503.1 361 61.8
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 3.1e-140 502.3 360 61.7
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 5.3e-140 501.5 447 53.9
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.7e-139 499.2 319 69.9
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.5e-139 498.8 364 62.9
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 3.5e-139 498.8 318 69.5
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.5e-139 498.8 318 69.5
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 4.5e-139 498.4 318 69.5
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.7e-138 496.5 359 60.4
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 3.8e-138 495.4 318 69.2
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.5e-138 494.2 346 64.5
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.1e-137 493.8 346 64.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.1e-137 493.8 366 59.6
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.5e-137 492.7 356 62.6
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 4.2e-137 491.9 362 61.0
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 9.4e-137 490.7 351 66.1
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.6e-136 490.0 345 64.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.0e-135 487.3 397 58.9
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.5e-134 483.4 342 64.0
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 4.4e-134 481.9 345 62.6
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.2e-133 479.6 355 60.6
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.8e-133 479.2 354 60.2
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.8e-133 479.2 355 60.6
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.8e-133 478.4 355 60.3
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.4e-132 476.9 347 66.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.5e-129 466.8 363 59.8
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 2.5e-129 466.1 340 63.8
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.2e-129 465.7 340 61.2
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.8e-127 458.0 356 60.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.5e-126 456.8 356 60.4
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 5.4e-124 448.4 343 63.8
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.6e-123 446.8 331 59.5
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 6.6e-122 441.4 356 56.7
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.3e-121 438.7 311 65.3
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.1e-120 436.4 367 59.9
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 6.8e-119 431.4 355 56.6
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-114 417.2 275 66.9
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-114 416.0 275 66.5
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-113 412.9 275 66.2
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 8.0e-112 407.9 265 66.8
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.8e-111 406.8 337 57.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.8e-110 401.0 315 61.6
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 3.2e-108 396.0 288 62.2
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 2.0e-107 393.3 265 66.4
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.8e-103 380.2 286 60.8
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.6e-98 361.3 226 68.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.8e-95 353.6 248 62.9
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 5.4e-92 342.0 333 46.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 9.2e-92 341.3 231 66.2
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.9e-90 335.9 204 71.6
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.8e-88 329.7 227 62.1
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.4e-86 322.8 329 49.8
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 9.9e-86 321.2 266 56.8
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 4.6e-83 312.4 362 43.4
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.3e-82 310.1 357 43.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 5.1e-82 308.9 215 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 6.2e-80 302.0 359 43.2
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.1e-79 301.2 360 43.1
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.7e-77 293.9 184 70.1
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.7e-75 286.6 200 65.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.2e-69 266.9 205 60.5
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.2e-67 261.2 191 60.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 4.5e-54 216.1 241 44.0
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.5e-53 212.2 152 67.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.2e-48 197.2 100 89.0
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 3.7e-48 196.4 158 55.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.2e-45 187.2 141 61.0
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.0e-38 164.1 229 41.5
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.3e-33 146.7 106 65.1
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 3.7e-32 143.3 110 58.2
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.4e-25 119.8 96 57.3
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.2e-20 103.6 94 45.7
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.6e-14 84.7 126 32.5
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 2.7e-06 57.4 102 32.4


User provided reference genes

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